Jean-Francois,

Are you running a current revision of Galaxy?  This issue should be
resolved in recent galaxy releases.

-Dannon


On Fri, Apr 19, 2013 at 3:47 PM, Jean-Francois Payotte <
jean-francois.payo...@dnalandmarks.ca> wrote:

> Dear Galaxy mailing list,
>
> We ran into the same issue described in this post:
> http://dev.list.galaxyproject.org/markupsafe-module-conflicts-tc4656214.html
> The exact error message we are getting, with a few different tools is:
>
> /Galaxy/galaxy_dist/lib/galaxy/__init__.py:79: UserWarning: Module
> markupsafe was already imported from
> /usr/lib64/python2.6/site-packages/markupsafe/__init__.pyc, but
> /Galaxy/galaxy_dist/eggs/MarkupSafe-0.12-py2.6-linux-x86_64-ucs4.egg is
> being added to sys.path
> self.check_version_conflict()
>
> From the solution given in the above-mentioned post, I guess we would have
> to run Galaxy inside virtualenv. (Details of the procedure to install
> virtualenv, are given here:
> http://wiki.galaxyproject.org/Admin/Config/Performance/ProductionServer)
>
> However, I am not sure to understand completely how it works.
> Can we use our already existing Galaxy instance with virtualenv?  And how
> can we achieve this?
>
> For the installation of "virtualenv" part, I think we are ok.
> It is the next step: how to tell Galaxy to run in this virtualenv, that I
> am not sure about.
>
> Thank you in advance for your help!
>
>
> *Jean-Francois*
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