Peter,

Thank you so much for the help

> Date: Thu, 25 Apr 2013 18:35:33 +0100
> Subject: Re: [galaxy-dev] /bin/sh: 1: filename: not found
> From: p.j.a.c...@googlemail.com
> To: ramao_tiago_tibur...@hotmail.com
> CC: galaxy-dev@lists.bx.psu.edu
> 
> On Thu, Apr 25, 2013 at 5:37 PM, Ramon Tiburski
> <ramao_tiago_tibur...@hotmail.com> wrote:
> > Hi Peter,
> >
> > I have this:
> > <command>filename $input $output</command>
> >
> > And my executable and xml are in the same directory
> >
> > Thank you
> 
> If you don't put the binary on the system $PATH, then you'll
> need to give an explicit path to it. You could try something like
> this in the short term while you are developing the tool:
> 
> <command>/mnt/galaxy/tools/my_stuff/filename $input $output</command>
> 
> If you intend to share this tool then you'll need to learn about
> how automatic dependency installation works via a
> tool_dependencies.xml file.
> 
> Peter
                                          
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