I'm looking at example_watch_folder.py and it's not clear from the example
how you submit multiple datasets to a library. In the example, the first
submit returns a libset [] with only a single entry and then proceeds to
iterate through each dataset in the libset in the following section:

data = {}

   data['folder_id'] = library_folder_id

   data['file_type'] = 'auto'

   data['dbkey'] = ''

   data['upload_option'] = 'upload_paths'



*data['filesystem_paths'] = fullpath*

   data['create_type'] = 'file'

   libset = submit(api_key, api_url + "libraries/%s/contents" % library_id,
data, return_formatted = False)

   time.sleep(5)

   for ds in libset:

       if 'id' in ds:

                        wf_data = {}

                        wf_data['workflow_id'] = workflow['id']

                        wf_data['history'] = "%s - %s" % (fname, workflow[
'name'])

                        wf_data['ds_map'] = {}

                        for step_id, ds_in in workflow['inputs'
].iteritems():

                            wf_data['ds_map'][step_id] = {'src':'ld', 'id'
:ds['id']}

                        res = submit( api_key, api_url + 'workflows',
wf_data, return_formatted=False)



Rob Leclerc, PhD
<http://www.linkedin.com/in/robleclerc> <https://twitter.com/#!/robleclerc>
P: (US) +1-(917)-873-3037
P: (Shanghai) +86-1-(861)-612-5469
Personal Email: rob.lecl...@aya.yale.edu
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to