Deeps,

It does not appear that you have installed taxBuilder on your system.
What commands did you use to compile it on your system?

If you type 'which taxBuilder' it should return no results (assuming
installed incorrectly). You will need to 'make clean' then 'make all'
then manually move the binary files it produces into some
environmental $PATH.


Hope that helps,

-Adam

--
Adam Brenner
Computer Science, Undergraduate Student
Donald Bren School of Information and Computer Sciences

Research Computing Support
Office of Information Technology
http://www.oit.uci.edu/rcs/

University of California, Irvine
www.ics.uci.edu/~aebrenne/
aebre...@uci.edu


On Fri, May 3, 2013 at 3:58 PM, Deepthi Thomas Kannanayakal <
dttho...@ucalgary.ca> wrote:

> Hi Galaxy team,
>
> I am having problems with taxonomy information fetching.(Metagenomic
> Analysses->Fetch taxonomic representation).
>
> According to the following link
>
>
> http://dev.list.galaxyproject.org/quot-Fetch-taxonomic-representation-quot-DOESN-T-WORK-td4565489.html
>
> I have installed libraries from https://bitbucket.org/natefoo/taxonomy
> I have installed them in my local directory(not in /usr/local).  But I am
> still having problem
>
> /bin/sh: taxBuilder: command not found
>
> What am I missing here?
>
> Thanks,
>
> Deeps
>
> *Deepthi Theresa Thomas Kannanayakal
>
> Bioinformatics Database Specialist
> Sun Visual Genomic Centre,
> Suite 1150,  Health Science Centre
> 3330 Hospital Drive NW
> Department of Biochemistry and Molecular Biology
>  Faculty of Medicine,  University of Calgary
> T2N 4N1
> Calgary,  Alberta,  Canada**
> *
> *Ph: (403) - 210 6661   Fax: (403) - 210 9538*
>
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