Currently it's not possible to have conditional job execution in workflows,
though this is definitely something we've talked about adding.
The conditional toolbox element repository that you found is actually some
of John's work on conditionally having tools in the toolbox, not for
making run-time decisions in workflows. This is an active pull request (
https://bitbucket.org/galaxy/galaxy-central/pull-request/160) that I hope
to have time to review soon.
On Tue, May 7, 2013 at 10:02 AM, Olivia Doppelt
> Dear developpers,
> I have a question concerning the insertion of conditions inside workflows ?
> Here, at the pasteur Institute, we would like to use galaxy to create a
> microbiome analysis workflow. However, it requires at least 10 different
> tools which may be or may not be used in several cases.
> For the moment, all I see is to create a giant wrapper for this workflow
> but it would be loosing the great interest of galaxy.
> I see on bitbucket that there is a branch on galaxy-central named
> "galaxy-central-conditional-**toolbox-elements" are there new elements
> since february ?
> Best regards,
> Olivia Doppelt-Azeroual, PhD
> Tel: 92 15
> CIB - Institut Pasteur
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