Hi Joachim,

can you try to delete/rename integrated_tool_panel.xml, it is generated
during start-up.

Hope that helps,

> Hi all,
> Stupidly enough, I installed a tool shed repo under 'root' of the 
> toolbox. Yes, it was EMBOSS5.0 (btw, installation went flawless!).
> 1. From the admin menu, I choose to unactivate the repo (manage tool 
> shed repo's)
> 2. From the admin menu, I reinstalled the tool shed from Main Tool Shed, 
> and chose to put it under a section 'EMBOSS'. This to no avail: all 
> tools still under root.
> 3. I manually edited the shed_tool_conf.xml and added the section tags
> 4. The section is now displayed, containing the EMBOSS tools. BUT the 
> tools under the root of the toolbox are still there.
> Any assistance here?
> Cheers,
> Joachim

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