No prob. Actually, I have found the answer thanks to the GalaxyAdmins meeting yesterday, where somebody extensively pointed to Trello ;-)

Cheers
J

Joachim Jacob

Rijvisschestraat 120, 9052 Zwijnaarde
Tel: +32 9 244.66.34
Bioinformatics Training and Services (BITS)
http://www.bits.vib.be
@bitsatvib

On 05/15/2013 07:00 PM, Dannon Baker wrote:
Heh, thanks for answering both halves of the email before I could even get to it :)


On Wed, May 15, 2013 at 12:03 PM, Joachim Jacob | VIB | <joachim.ja...@vib.be <mailto:joachim.ja...@vib.be>> wrote:

    Already reported in Trello
    https://trello.com/c/o0S3klAF

    Thanks for the fix!


    Joachim Jacob

    Rijvisschestraat 120, 9052 Zwijnaarde
    Tel: +32 9 244.66.34 <tel:%2B32%209%20244.66.34>
    Bioinformatics Training and Services (BITS)
    http://www.bits.vib.be
    @bitsatvib

    On 05/15/2013 03:19 PM, Joachim Jacob | VIB | wrote:

        run_reports.sh dies silently.

        Its last will in reports_webapp.log states:

        Traceback (most recent call last):
          File "./scripts/paster.py", line 33, in <module>
            serve.run()
          File
        "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py",
        line 1056, in run
            invoke(command, command_name, options, args[1:])
          File
        "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py",
        line 1062, in invoke
            exit_code = runner.run(args)
          File
        "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py",
        line 227, in run
            result = self.command()
          File
        "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py",
        line 650, in command
            app = loadapp( app_spec, name=app_name, relative_to=base,
        global_conf=vars)
          File
        "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py",
        line 350, in loadapp
            return loadobj(APP, uri, name=name, **kw)
          File
        "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py",
        line 375, in loadobj
            return context.create()
          File
        "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py",
        line 813, in create
            return self.object_type.invoke(self)
          File
        "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py",
        line 249, in invoke
            return fix_call(context.object, context.global_conf,
        **context.local_conf)
          File
        "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py",
        line 97, in fix_call
            val = callable(*args, **kw)
          File
        "/home/galaxy/galaxy-dist/lib/galaxy/webapps/reports/buildapp.py",
        line 61, in app_factory
            add_ui_controllers( webapp, app )
          File
        "/home/galaxy/galaxy-dist/lib/galaxy/webapps/reports/buildapp.py",
        line 33, in add_ui_controllers
            from galaxy.web.base.controller import BaseUIController
          File
        "/home/galaxy/galaxy-dist/lib/galaxy/web/base/controller.py",
        line 23, in <module>
            from galaxy.visualization.genome.visual_analytics import
        get_tool_def
          File
        
"/home/galaxy/galaxy-dist/lib/galaxy/visualization/genome/visual_analytics.py",
        line 3, in <module>
            from galaxy.tools.parameters.basic import
        IntegerToolParameter, FloatToolParameter, SelectToolParameter
          File
        "/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py", line
        57, in <module>
            from galaxy.visualization.genome.visual_analytics import
        TracksterConfig
        ImportError: cannot import name TracksterConfig

        Anybody knowing the recipe to reanimate the patient? Thanks.
        BTW, this is the first time I am starting up run_reports.sh
        after the 1 april/8 april update. Did not had this issue before.


        Joachim


    ___________________________________________________________
    Please keep all replies on the list by using "reply all"
    in your mail client.  To manage your subscriptions to this
    and other Galaxy lists, please use the interface at:
    http://lists.bx.psu.edu/

    To search Galaxy mailing lists use the unified search at:
    http://galaxyproject.org/search/mailinglists/



___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/mailinglists/

Reply via email to