On Mon, May 20, 2013 at 2:47 PM, Greg Von Kuster <g...@bx.psu.edu> wrote: > Hello Peter, > > Sorry for the delay on this - I was out of the lab last Friday. > > On May 17, 2013, at 10:16 AM, Peter Cock wrote: > >> Hi Greg, >> >> Do you guys have a rough plan for when inter-ToolShed dependencies >> will be supported? > > There is a bunch of work to do between now an the GCC to prepare > for it. However, the tool shed dependency features have matured to > the point that I believe this should not be as difficult to implement as > it would have been earlier. I'll try to get this implemented before the > GCC.
That's fine for me (given the short term fix below). >> I've been using the Test Tool Shed to validate tools before uploading >> them to the main Tool Shed - this uncovers things like omitted test >> files which I don't find locally since I'm testing in-situ. >> >> Right now the single biggest class of test failures amongst my tools on >> the Test Tool Shed is a missing dependencies on the blast_datatypes >> repository: http://toolshed.g2.bx.psu.edu/view/devteam/blast_datatypes >> >> As a short term measure, could the dev team upload blast_datatypes >> to the Test Tool Shed as well please (and give me write access)? Then >> thanks to the recent change in  I can reference the dependency >> without explicitly naming the Tool Shed. > > I've copied the blast_datatypes from the main tool shed to the test > tool shed with all history in tact. See > > http://testtoolshed.g2.bx.psu.edu/view/devteam/blast_datatypes > > >> >> If you can do it in a way that preserves the same revision history can >> change set hashes even better - then I can replace this: >> >> <repository toolshed="http://toolshed.g2.bx.psu.edu" >> name="blast_datatypes" owner="devteam" >> changeset_revision="f9a7783ed7b6" /> >> >> with: >> >> <repository name="blast_datatypes" owner="devteam" >> changeset_revision="f9a7783ed7b6" /> >> >> and can use the same repository_dependencies.xml file on both Tool >> Sheds. Great, I'm trying that now here: http://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go/9ef0d4ecb9d5 http://testtoolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr/bf634ebee84c http://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus/2d4757de6180 Thanks, Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/