On Mon, May 20, 2013 at 2:47 PM, Greg Von Kuster <g...@bx.psu.edu> wrote:
> Hello Peter,
>
> Sorry for the delay on this - I was out of the lab last Friday.
>
> On May 17, 2013, at 10:16 AM, Peter Cock wrote:
>
>> Hi Greg,
>>
>> Do you guys have a rough plan for when inter-ToolShed dependencies
>> will be supported?
>
> There is a bunch of work to do between now an the GCC to prepare
> for it.  However, the tool shed dependency features have matured to
> the point that I believe this should not be as difficult to implement as
> it would have been earlier.  I'll try to get this implemented before the
> GCC.

That's fine for me (given the short term fix below).

>> I've been using the Test Tool Shed to validate tools before uploading
>> them to the main Tool Shed - this uncovers things like omitted test
>> files which I don't find locally since I'm testing in-situ.
>>
>> Right now the single biggest class of test failures amongst my tools on
>> the Test Tool Shed is a missing dependencies on the blast_datatypes
>> repository: http://toolshed.g2.bx.psu.edu/view/devteam/blast_datatypes
>>
>> As a short term measure, could the dev team upload blast_datatypes
>> to the Test Tool Shed as well please (and give me write access)? Then
>> thanks to the recent change in [1] I can reference the dependency
>> without explicitly naming the Tool Shed.
>
> I've copied the blast_datatypes from the main tool shed to the test
> tool shed with all history in tact.  See
>
> http://testtoolshed.g2.bx.psu.edu/view/devteam/blast_datatypes
>
>
>>
>> If you can do it in a way that preserves the same revision history can
>> change set hashes even better - then I can replace this:
>>
>> <repository toolshed="http://toolshed.g2.bx.psu.edu";
>> name="blast_datatypes" owner="devteam"
>> changeset_revision="f9a7783ed7b6" />
>>
>> with:
>>
>> <repository name="blast_datatypes" owner="devteam"
>> changeset_revision="f9a7783ed7b6" />
>>
>> and can use the same repository_dependencies.xml file on both Tool
>> Sheds.

Great, I'm trying that now here:

http://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go/9ef0d4ecb9d5
http://testtoolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr/bf634ebee84c
http://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus/2d4757de6180

Thanks,

Peter
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