On Mon, May 13, 2013 at 11:09 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > > I remain puzzled why I am seeing seemingly stochastic missing test > results. >
Hi Dave, This continues - although I have been making progress with the tests for some of my tools. Currently there are a number of repositories reported as failing but I can't see the error (and so can't do much about fixing it): http://testtoolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr http://testtoolshed.g2.bx.psu.edu/view/peterjc/clinod http://testtoolshed.g2.bx.psu.edu/view/peterjc/get_orfs_or_cdss http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_primer_clip http://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus When previously visible this was due to a test framework limitation testing with composite output files: http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-April/014365.html Given I suspect a cache issue hiding the test failures, it might help if rather than the current text like "Time tested: ~ 8 hours ago" this could also state the date and time of the test (in UTC/GMT to avoid locale confusion). Thanks, Peter ---- Other repositories failing with a clear error message: http://testtoolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp Missing dependencies, should have been skipped, see http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-May/014748.html http://testtoolshed.g2.bx.psu.edu/view/peterjc/mira_assembler Limitation of test framework, Trello issue open for this, http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-April/014366.html http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_rename Limitation of test framework, issue raised, http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-May/014701.html http://testtoolshed.g2.bx.psu.edu/view/peterjc/venn_list Missing an R/Bioconductor dependency, best practise for handling this has yet to be agreed. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
