On Mon, May 20, 2013 at 3:05 PM, Peter Cock <p.j.a.c...@googlemail.com>
> On Mon, May 20, 2013 at 2:47 PM, Greg Von Kuster <g...@bx.psu.edu> wrote:
>> Peter wrote:
>>> Right now the single biggest class of test failures amongst my tools on
>>> the Test Tool Shed is a missing dependencies on the blast_datatypes
>>> repository: http://toolshed.g2.bx.psu.edu/view/devteam/blast_datatypes
>>> As a short term measure, could the dev team upload blast_datatypes
>>> to the Test Tool Shed as well please (and give me write access)? Then
>>> thanks to the recent change in [1] I can reference the dependency
>>> without explicitly naming the Tool Shed.
>> I've copied the blast_datatypes from the main tool shed to the test
>> tool shed with all history in tact.  See
>> http://testtoolshed.g2.bx.psu.edu/view/devteam/blast_datatypes
>>> If you can do it in a way that preserves the same revision history can
>>> change set hashes even better - then I can replace this:
>>> <repository toolshed="http://toolshed.g2.bx.psu.edu";
>>> name="blast_datatypes" owner="devteam"
>>> changeset_revision="f9a7783ed7b6" />
>>> with:
>>> <repository name="blast_datatypes" owner="devteam"
>>> changeset_revision="f9a7783ed7b6" />
>>> and can use the same repository_dependencies.xml file on both Tool
>>> Sheds.
> Great, I'm trying that now here:
> http://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go/9ef0d4ecb9d5

Hi Greg (& Dave),

Thanks for Dave for fixing the missing test results issue,

I can now see the effect the dependency change had -
unfortunately the blast_datatypes install seems to be
unsuccessful, but I am not seeing a helpful error from
the Tool Shed tests.

Let's focus on the simplest case, where blast_datatypes
is the only dependency:

<?xml version="1.0"?>
<repositories description="This requires the BLAST datatype
definitions (e.g. the BLAST XML format).">
<!-- Revision 4:f9a7783ed7b6 on the main tool shed is v0.0.14 which
added BLAST databases -->
<repository name="blast_datatypes" owner="devteam"
changeset_revision="f9a7783ed7b6" />


Automated tool test results

Tool test 
Automated test 
*Time tested:* ~ 6 hours ago*System:* Linux 3.5.0-21-generic*Architecture:*
 x86_64*Python version:* 2.7.3*Galaxy revision:* 9821:feaab01c738a*Galaxy
database version:* 115*Tool shed revision:* 9820:f5fe2f094060*Tool shed
database version:* 19*Tool shed mercurial version:* 2.2.3
Installation errors* - no functional tests were run for any tools in this
Tool shedNameOwnerChangeset revisiontesttoolshed.g2.bx.psu.edu

It seems that an error occurred with the dependencies, but
unfortunately all we get as the error message is "None".


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