I want to include a new tool to galaxy. The tool is written in C++. How
do I write the xml file to execute a cpp program? The tool that I am
trying to integrate is https://code.google.com/p/bedtools/
I have the class file to be executed and the command to execute it. For
'IntersectBed' is my class file. The command to execute it is
-a reads.bed -b genes.bed (reads.bed and genes.bed are input files
provided by the user)
How should I write the <command> tag in the xml file so as to execute the
above command? Since C++ is complied as opposed to Python which is
interpreted, I am not sure how to write the <command> tag.
I am a newbie. I appreciate any guidance offered!
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