On Wed, May 22, 2013 at 9:59 PM, Greg Von Kuster <g...@bx.psu.edu> wrote:
>
> I cannot guarantee it, but this may be related to a fix I just committed
> that populates the <repository> tag in the dependency definitions with a
> toolshed attribute if it is missing (it looks like it is in your case).  I
> used to not populate the tag, but simply stored the tool shed in the
> repository metadata.  Bjorn discovered, however, that certain repository
> installations would not succeed if the toolshed attribute was missing.  WHen
> I investigated this, I discovered  that some downstream stuff could not
> locate the appropriate tool shed if the attribute was missing from the tag.
>
> I fixed this in 9836:252027d00b44 by populating this tag attribute if it
> was missing.  Unfortunately, a new dependency definition has to be uploaded
> to those repositories that have definitions where it is not set in order to
> get this fix.
>
> I don't know if updating your dependency file in this repository will fix
> this issue, but just wanted to alert you to this.
>
> Very sorry for any inconvenience!
>
> Greg Von Kuster

Finger's crossed - I've changed repository_dependencies.xml by
updating the comment in it,

http://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus/bb81d3afa28d
http://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go/f3a61c2cf309
http://testtoolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr/482b7f4d3587

As an aside, the XML comment line seems not to show up properly
in the HTML diff view on the toolshed for this change. For example:

Commit message:
Uploaded v0.0.20 preview 8, update comment in dependencies XML
modified:
tools/ncbi_blast_plus/repository_dependencies.xml
tools/ncbi_blast_plus/repository_dependencies.xml
--- a/tools/ncbi_blast_plus/repository_dependencies.xmlMon May 20
10:04:51 2013 -0400
+++ b/tools/ncbi_blast_plus/repository_dependencies.xmlThu May 23
04:47:28 2013 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
 <repositories description="This requires the BLAST datatype
definitions (e.g. the BLAST XML format).">
-<!-- Revision 4:f9a7783ed7b6 on the main tool shed is v0.0.14 which
added BLAST databases -->
-<repository name="blast_datatypes" owner="devteam"
changeset_revision="f9a7783ed7b6" />
-</repositories>
+
+<repository changeset_revision="f9a7783ed7b6" name="blast_datatypes"
owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu"; />
+</repositories>
\ No newline at end of file

That first "plus" line should give the new comment, i.e.

<!-- Revision 4:f9a7783ed7b6 on the main (and test) tool shed is
v0.0.14 which added BLAST databases -->

Regards,

Peter
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