Hello galaxy-dev gurus,

I was trying to upgrade my galaxy server...
I removed the old galaxy-dist and ran
     hg clone https://bitbucket.org/galaxy/galaxy-dist/

restored universe_wsgi.ini file and various tool-data config, and tried to
restart galaxy.




After some twiddling, I see the error message at the end of this email.
The strangest thing I see is this

/usr/prog/galaxy/galaxy-dist/eggs/drmaa-0.4b3-py2.6.egg/drmaa/wrappers.py
on my current system, drmaa-0.4b3-py2.6.egg is a file and not a
directory...

is the latest code that I just downloaded corrupted or something?

Much thanks in advance for your help in this matter.
-Tin


PS.  Relevant entry in universe_wsgi.ini on cluster config:
            start_job_runners = drmaa
            default_cluster_job_runner =  drmaa:///



galaxy.tools.genome_index DEBUG 2013-05-24 08:42:49,150 Loaded genome index
tool: __GENOME_INDEX__
galaxy.jobs.manager DEBUG 2013-05-24 08:42:49,153 Starting job handler
galaxy.jobs.runners DEBUG 2013-05-24 08:42:49,155 Starting 4 LocalRunner
workers
galaxy.jobs DEBUG 2013-05-24 08:42:49,156 Loaded job runner
'galaxy.jobs.runners.local:LocalJobRunner' as 'local'
Traceback (most recent call last):
  File
"/usr/prog/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line
35, in app_factory
    app = UniverseApplication( global_conf = global_conf, **kwargs )
  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/app.py", line 159, in
__init__
    self.job_manager = manager.JobManager( self )
  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/jobs/manager.py", line 31,
in __init__
    self.job_handler = handler.JobHandler( app )
  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/jobs/handler.py", line 29,
in __init__
    self.dispatcher = DefaultJobDispatcher( app )
  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/jobs/handler.py", line 543,
in __init__
    self.job_runners = self.app.job_config.get_job_runner_plugins()
  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/jobs/__init__.py", line
486, in get_job_runner_plugins
    rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get(
'kwds', {} ) )
  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/jobs/runners/drmaa.py",
line 75, in __init__
    self.ds.initialize()
  File
"/usr/prog/galaxy/galaxy-dist/eggs/drmaa-0.4b3-py2.6.egg/drmaa/__init__.py",
line 274, in initialize
    _w.init(contactString)
  File "
/usr/prog/galaxy/galaxy-dist/eggs/drmaa-0.4b3-py2.6.egg/drmaa/wrappers.py",
line 59, in init
    return _lib.drmaa_init(contact, error_buffer, sizeof(error_buffer))
  File
"/usr/prog/galaxy/galaxy-dist/eggs/drmaa-0.4b3-py2.6.egg/drmaa/errors.py",
line 90, in error_check
    raise _ERRORS[code-1]("code %s: %s" % (code, error_buffer.value))
DrmCommunicationException: code 2: range_list containes no elements
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