Hello galaxy-dev gurus,

I was trying to upgrade my galaxy server...
I removed the old galaxy-dist and ran
     hg clone https://bitbucket.org/galaxy/galaxy-dist/

restored universe_wsgi.ini file and various tool-data config, and tried to
restart galaxy.

After some twiddling, I see the error message at the end of this email.
The strangest thing I see is this

on my current system, drmaa-0.4b3-py2.6.egg is a file and not a

is the latest code that I just downloaded corrupted or something?

Much thanks in advance for your help in this matter.

PS.  Relevant entry in universe_wsgi.ini on cluster config:
            start_job_runners = drmaa
            default_cluster_job_runner =  drmaa:///

galaxy.tools.genome_index DEBUG 2013-05-24 08:42:49,150 Loaded genome index
tool: __GENOME_INDEX__
galaxy.jobs.manager DEBUG 2013-05-24 08:42:49,153 Starting job handler
galaxy.jobs.runners DEBUG 2013-05-24 08:42:49,155 Starting 4 LocalRunner
galaxy.jobs DEBUG 2013-05-24 08:42:49,156 Loaded job runner
'galaxy.jobs.runners.local:LocalJobRunner' as 'local'
Traceback (most recent call last):
"/usr/prog/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line
35, in app_factory
    app = UniverseApplication( global_conf = global_conf, **kwargs )
  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/app.py", line 159, in
    self.job_manager = manager.JobManager( self )
  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/jobs/manager.py", line 31,
in __init__
    self.job_handler = handler.JobHandler( app )
  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/jobs/handler.py", line 29,
in __init__
    self.dispatcher = DefaultJobDispatcher( app )
  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/jobs/handler.py", line 543,
in __init__
    self.job_runners = self.app.job_config.get_job_runner_plugins()
  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/jobs/__init__.py", line
486, in get_job_runner_plugins
    rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get(
'kwds', {} ) )
  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/jobs/runners/drmaa.py",
line 75, in __init__
line 274, in initialize
  File "
line 59, in init
    return _lib.drmaa_init(contact, error_buffer, sizeof(error_buffer))
line 90, in error_check
    raise _ERRORS[code-1]("code %s: %s" % (code, error_buffer.value))
DrmCommunicationException: code 2: range_list containes no elements
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to