I am trying to use IGV on local Galaxy to view BED and other kinds of files.
I added the xml file and made changes in the datatypes_conf.xml file too but
the error says:
Unable to parse header with error: File not found:..for input source..
The same file works for IGB though.
Please suggest the correct settings for this case.
Ann Black-Ziegelbein annblack at eng.uiowa.edu
Thu Mar 15 23:42:32 EDT 2012
Hello - I am wanting to be able to display bed files from Galaxy in IGV. I
created a bed.xml display application description, and edited the
datatypes_conf.xml to enable the igv display of datasets of bed format.
However, when I select the link in Galaxy to "Display with IGV local" I
get the following error message in Galaxy: You must import this dataset into
your current history before you can
view it at the desired display application. I am attaching my bed.xml file I
created based off of existing IGV
display types. I was hoping someone either has a working display
descriptors for bed files for IGV, or might know what my error is. Thanks much,
-------------- next part --------------
A non-text attachment was scrubbed...
Size: 4263 bytes
Desc: not available
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: