I'm assuming you're referring to main.g2.bx.psu.edu's tool configuration as
a reference.  Some of these components are installed via the tool shed, and
others may have been manually added to main and are not included in the
base tool_conf.xml.sample.  I may be able to point you in the right
direction, though -- what is it that you're trying to do?

-Dannon


On Tue, May 21, 2013 at 3:31 PM, vijayalakshmi <vijira...@gmail.com> wrote:

> Hi all,
>
>    I am trying to get the *"tool_conf.xml"* <section> code corresponding
> to the following topics listed below. I am unable to find it in both the
> default build and the stable build in bitbucket. If you can point me to
> where I can find it, it'd be swell.
>
> 1) NGS: Variant detection
> 2) NGS: Picard(beta)
> 3) BEDTools
> 4) SnpEff
>
> Thanks,
> VJ.
>
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