Hi, Saket.
Welcome aboard - help is always available here or irc if you're in the
right timezone.
a brand new eQTL option from Marylyn Ritchie's group I stumbled across at
http://gettinggeneticsdone.blogspot.com.au/ today - the comments about
plink are apt - it can be a pain to work with in my experience.

On Fri, May 31, 2013 at 4:35 PM, Saket Choudhary <sake...@gmail.com> wrote:

> Hi Everyone!
> I have been selected to work on the eQTL pipeline and visualisation for
> the Galaxy Project as part of the Google Summer of Code 2013 (
> http://www.google-melange.com/gsoc/homepage/google/gsoc2013)
> I am pursuing my fourth year of undergraduate studies at Indian Institute
> of Technology Bombay(http://www.iitb.ac.in/). My areas of interest are
> broadly Bioinformatics and of lately I have been working on NGS problems.
> I have created a blog here : http://galaxy-gsoc2013.blogspot.com/ . The
> first post should be up soon.
> My proposal is  here :
> http://www.google-melange.com/gsoc/proposal/review/google/gsoc2013/saketkc/51001.
>  I would love to know your suggestions/comments.
> I am relatively new to Galaxy, and some of my questions in the process
> might be elementary, so kindly bear with it :)
> Thanks
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