Thanks Nate,

In fact,  our ~/.sge_request  set workq by default.
So, we have changed this parameter in ~/.sge_request file in order to change the working queue.


Thanks again for your help,
Sarah




Nate Coraor a ├ęcrit :
On May 22, 2013, at 11:36 AM, Sarah Maman wrote:

Hi everyone,
Galaxy is set up on our cluster, and so far everything is working just fine. 
However, we'd like to change the submission queue from the default to a 
specific one.

To do so, we tryed to set on the universe_wsgi.ini file the 
default_cluster_job_runner parameter as following:
default_cluster_job_runner = drmaa://-q test.q -l mem=8G -l h_vmem=10G/

When doing so, an error occured telling us the job has been rejected because 2 
queues were specified: the workq (default one) and the test.q.
Should be the queue setting this way ? What are we doing wrong ?

Hi Sarah,

Without knowing what's going on in your environment I can't say for sure, but I 
would guess that something else is (~/.sge_request?) is also attempting to set 
the queue.  Are you able to use `qsub -q test.q` on the command line as the 
same user that runs Galaxy?

Thanks,
--nate

thanks for your help,
Sarah
Sarah Maman
INRA - LGC - SIGENAE
Chemin de Borde-Rouge - Auzeville - BP 52627
31326 Castanet-Tolosan cedex - FRANCE
Tel: +33(0)5.61.28.57.08 Fax: +33(0)5.61.28.57.53
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--
         --*--
Sarah Maman
INRA - LGC - SIGENAE
http://www.sigenae.org/
Chemin de Borde-Rouge - Auzeville - BP 52627
31326 Castanet-Tolosan cedex - FRANCE
Tel:   +33(0)5.61.28.57.08
Fax: +33(0)5.61.28.57.53 --*--

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