http://wiki.galaxyproject.org/Admin/Tools/Tool%20Dependencies


On Wed, Jun 5, 2013 at 6:19 PM, Sarah Maman <sarah.ma...@toulouse.inra.fr>wrote:

> Hello,
>
> Some Galaxy tools failed to import rpy module and displays the following
> message:
>
> Traceback (most recent call last):
>  File 
> "/usr/local/bioinfo/src/**galaxy/galaxy-dist/tools/**plotting/histogram.py",
> line 5, in <module>
>    from rpy import *
> ImportError: No module named rpy
>
>
> For instance, the tool "Regrouping" (tools/stats/grouping.py) have been
> refactored in 2011 by Kanwei Li to use numpy instead of rpy. And this tool
> runs on my local instance of Galaxy.
> But I would like to be able use rpy module instead of refactor the others
> tools.
>
> Could you, please, help me to understand why the eggs ' import does not
> allow the use of rpy module? How to debug these tools?
>
> Thnaks in advance,
> Sarah
>
>
> --
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> Sarah Maman
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-- 
Ross Lazarus MBBS MPH;
Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444
http://scholar.google.com/citations?hl=en&user=UCUuEM4AAAAJ
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