I looked through others' problems, but this seems unique.  I just did a
clean install of Ubuntu 12.04 and wanted to add Galaxy to integrate our
various pipelines (16S rRNA via qiime, RADseq data, small genome
assemblies).  However, I seem to be stuck at the beginning of the install.
 Followed instructions from this page explicitly (
http://wiki.galaxyproject.org/Admin/Get%20Galaxy).  When I run sh run.sh, I
get the below output, and the server cannot be accessed via web browser.  I
am using python 2.7.3.  I opened a python instance and ran import bz2, but
then I get the same error (ImportError: No module named bz2).

enggen@OptimusPrime:~/galaxy-dist$ sh run.sh
Traceback (most recent call last):
  File "./scripts/paster.py", line 33, in <module>
    serve.run()
  File "/home/enggen/galaxy-dist/lib/galaxy/util/pastescript/serve.py",
line 1049, in run
    invoke(command, command_name, options, args[1:])
  File "/home/enggen/galaxy-dist/lib/galaxy/util/pastescript/serve.py",
line 1055, in invoke
    exit_code = runner.run(args)
  File "/home/enggen/galaxy-dist/lib/galaxy/util/pastescript/serve.py",
line 220, in run
    result = self.command()
  File "/home/enggen/galaxy-dist/lib/galaxy/util/pastescript/serve.py",
line 643, in command
    app = loadapp( app_spec, name=app_name, relative_to=base,
global_conf=vars)
  File "/home/enggen/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py",
line 350, in loadapp
    return loadobj(APP, uri, name=name, **kw)
  File "/home/enggen/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py",
line 374, in loadobj
    global_conf=global_conf)
  File "/home/enggen/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py",
line 399, in loadcontext
    global_conf=global_conf)
  File "/home/enggen/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py",
line 423, in _loadconfig
    return loader.get_context(object_type, name, global_conf)
  File "/home/enggen/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py",
line 561, in get_context
    section)
  File "/home/enggen/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py",
line 620, in _context_from_explicit
    value = import_string(found_expr)
  File "/home/enggen/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py",
line 125, in import_string
    return pkg_resources.EntryPoint.parse("x=" + s).load(False)
  File "/home/enggen/galaxy-dist/lib/pkg_resources.py", line 1954, in load
    entry = __import__(self.module_name, globals(),globals(), ['__name__'])
  File "/home/enggen/galaxy-dist/lib/galaxy/web/buildapp.py", line 3, in
<module>
    from galaxy.webapps.galaxy.buildapp import app_factory
  File "/home/enggen/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py",
line 17, in <module>
    import galaxy.model
  File "/home/enggen/galaxy-dist/lib/galaxy/model/__init__.py", line 23, in
<module>
    import galaxy.datatypes.registry
  File "/home/enggen/galaxy-dist/lib/galaxy/datatypes/registry.py", line 5,
in <module>
    import data, tabular, interval, images, sequence, qualityscore,
genetics, xml, coverage, tracks, chrominfo, binary, assembly, ngsindex
  File "/home/enggen/galaxy-dist/lib/galaxy/datatypes/tabular.py", line 14,
in <module>
    from galaxy.datatypes.checkers import is_gzip
  File "/home/enggen/galaxy-dist/lib/galaxy/datatypes/checkers.py", line 1,
in <module>
    import os, gzip, re, gzip, zipfile, binascii, bz2, imghdr
ImportError: No module named bz2




Andrew Krohn
PhD Candidate, NAU Biological Sciences
Research Technician, EnGGen
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