Hans-Rudolf,

First off, thanks for the response.

On Friday 07 June 2013 03:00:40 Hans-Rudolf Hotz wrote:

> b) make sure two edit ~/tool-data/shared/ucsc/ucsc_build_sites.txt
>     by listing all genomes you are interested to use for the display, eg:
> 
>     main      http://genome.ucsc.edu/cgi-bin/hgTracks?        mm7,mm8,mm9
> 
>     The database attribute of your dataset (ie history item) has to be
>     set to either mm7 or mm8 or mm9. You will not get the the display
>     option if the database is set to mm10 or hg18

That's it!  The test dataset I've been given is part of the "hg19" database, 
but that isn't included in:

[galaxy@login002 galaxy-dist]$ grep main 
tool-data/shared/ucsc/ucsc_build_sites.txt
main    http://genome.ucsc.edu/cgi-bin/hgTracks?        
priPac1,danRer4,mm9,mm8,droAna1,mm5,caeRem2,mm7,mm6,panTro1,dm3,panTro2,anoCar1,ce4,galGal3,galGal2,ce1,rn3,rn2,droMoj1,droMoj2,rn4,droYak1,droYak2,dp3,dp2,dm1,canFam1,danRer5,canFam2,danRer3,danRer2,ornAna1,ci2,ci1,tetNig1,bosTau1,bosTau3,bosTau2,equCab1,oryLat1,droAna2,droEre1,ponAbe2,rheMac2,sacCer1,droPer1,droSim1,monDom1,cb1,dm2,droSec1,strPur1,droVir2,droVir1,strPur2,sc1,xenTro1,droGri1,xenTro2,cb3,gasAcu1,caePb1,anoGam1,fr2,fr1,hg15,hg16,hg17,hg18,felCat3,apiMel2,monDom4,apiMel1,ce2

When I uploaded the same dataset to the "Main" galaxy server: 
https://main.g2.bx.psu.edu/, it did give me the "display at UCSC" option, so 
they must have updated their database list.  

Thanks again,
Malcolm


-- 
Malcolm Tobias
314.362.1594

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