Hi all,
Looked for this in the list but couldn't find it. Admittedly I was using
gmail to search the list so I may have missed it - apologies if so.
I have put a very simple tool into a local toolshed (latest version of
toolshed) which just consists of an xml wrapper and a perl script in the
repository. (attached) I want to test it prior to putting it in the main
toolshed..
When I install the tool into my galaxy (latest-stable version) it installs
ok.
I then go to run the tool and it loads the interface quite happily but upon
execute it says tool doesn't exist.
I think its looking in the wrong folder on the server for the tool.
In the main galaxy window:
Tool '
galaxy-dev.genome.edu.au:9009/repos/slugger/fasta_stats/fasta-stats/1.0.0'
does not exist, kwd={'tool_state':
u'80025569356339643261396332633035356535356161303366316533393935313439613834366130616239363a3762323235663566373036313637363535663566323233613230333032633230323236343631373436313733363537343232336132303232333233323232376471002e',
'runtool_btn': u'Execute', 'refresh': u'refresh', 'dataset': u'22'}
In the server log:
galaxy.webapps.galaxy.controllers.tool_runner ERROR 2013-06-11 14:23:14,434
index called with tool id '
galaxy-dev.genome.edu.au:9009/repos/slugger/fasta_stats/fasta-stats/1.0.0'
but no such tool exists
128.250.103.244 - - [11/Jun/2013:14:23:14 +1100] "POST /tool_runner/index
HTTP/1.1" 200 - "
https://galaxy-vbc-test.monash.edu/tool_runner?tool_id=galaxy-dev.genome.edu.au%3A9009/repos/slugger/fasta_stats/fasta-stats/1.0.0";
"Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko)
Chrome/27.0.1453.110 Safari/537.36"
The tool is installed in (via the toolshed install process):
shed_tools/
galaxy-dev.genome.edu.au/repos/slugger/fasta_stats/94469f4c8a55/fasta_stats
Any ideas?
Cheers,
Simon Gladman
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