Hi,

I also have that error in the latest toolshed:

AssertionError: Attempting to set field 'topology' to value '['-c']' in
form 'tool_form' threw exception: multiple matches to value/label "c" in
list control control: <SelectControl(topology=[-c, -l])> If the above
control is a DataToolparameter whose data type class does not include a
sniff() method, make sure to include a proper 'ftype' attribute to the
tag for the control within the <test> tag set.

http://testtoolshed.g2.bx.psu.edu/view/bgruening/trna_prediction

Any hint on how to resolve that, or is it a recent regression?

Cheers,
Björn


> On Thu, May 9, 2013 at 10:49 AM, Peter Cock
> <p.j.a.c...@googlemail.com> wrote:
> >
> > Hi Dave,
> >
> > As you hoped, these test now shows up on the tool page (as expected
> > they are test failures - apparently my install script isn't quite
> right yet):
> >
> > ...
> >
> > This one is more interesting, and appears to be a problem with the
> > test framework (both tests pass locally via
> run_functional_tests.sh):
> >
> >
> http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_rename/16a1a5ae98e9
> > Functional test results for changeset revision 16a1a5ae98e9 of
> seq_rename
> > 0 tests passed, 2 tests failed, 0 tests missing test components.
> >
> > I'll raise that on a new thread,
> 
> Here's the output from the (Test) Tool Shed where the tests fail:
> 
> Tests that failed 
> Tool id: seq_rename
> Tool version: seq_rename
> Test: test_tool_000000
> (functional.test_toolbox.TestForTool_testtoolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.3)
> Stderr: 
> 
> Traceback: 
> Traceback (most recent call last): File
> "/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py",
>  line 171, in test_tool self.do_it( td, shed_tool_id=shed_tool_id ) File 
> "/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py",
>  line 78, in do_it self.run_tool( testdef.tool.id, repeat_name=repeat_name, 
> **page_inputs ) File 
> "/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/base/twilltestcase.py",
>  line 1320, in run_tool self.submit_form( **kwd ) File 
> "/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/base/twilltestcase.py",
>  line 1270, in submit_form raise AssertionError( errmsg ) AssertionError: 
> Attempting to set field 'new_column' to value '['2']' in form 'tool_form' 
> threw exception: cannot find value/label "2" in list control control: 
> <SelectControl(new_column=[1])> If the above control is a DataToolparameter 
> whose data type class does not include a sniff() method, make sure to include 
> a proper 'ftype' attribute to the tag for the control within the <test> tag 
> set.
> Tool id: seq_rename
> Tool version: seq_rename
> Test: test_tool_000001
> (functional.test_toolbox.TestForTool_testtoolshed.g2.bx.psu.edu/repos/peterjc/seq_rename/seq_rename/0.0.3)
> Stderr: 
> 
> Traceback: 
> Traceback (most recent call last): File
> "/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py",
>  line 171, in test_tool self.do_it( td, shed_tool_id=shed_tool_id ) File 
> "/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py",
>  line 78, in do_it self.run_tool( testdef.tool.id, repeat_name=repeat_name, 
> **page_inputs ) File 
> "/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/base/twilltestcase.py",
>  line 1320, in run_tool self.submit_form( **kwd ) File 
> "/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/base/twilltestcase.py",
>  line 1270, in submit_form raise AssertionError( errmsg ) AssertionError: 
> Attempting to set field 'new_column' to value '['c2']' in form 'tool_form' 
> threw exception: cannot find value/label "c2" in list control control: 
> <SelectControl(new_column=[1])> If the above control is a DataToolparameter 
> whose data type class does not include a sniff() method, make sure to include 
> a proper 'ftype' attribute to the tag for the control within the <test> tag 
> set.
> 
> Both tests fail with the following assertion:
> 
> AssertionError: Attempting to set field 'new_column' to value '['c2']'
> in form 'tool_form' threw exception: cannot find value/label "c2" in
> list control control: <SelectControl(new_column=[1])> If the above
> control is a DataToolparameter whose data type class does not include
> a sniff() method, make sure to include a proper 'ftype' attribute to
> the tag for the control within the <test> tag set.
> 
> Both tests pass on my development machine run via:
> 
> $ ./run_functional_tests.sh -id seq_rename
> 
> The two tests are defined as follows - identical bar the style used
> for the column arguments - I was wondering if the Tool Shed testing
> was stricter about numeric column names, but that does not seem to be
> relevant:
> 
> 
>     <tests>
>         <test>
>             <param name="input_file" value="four_human_proteins.fasta"
> ftype="fasta" />
>             <param name="input_tabular"
> value="four_human_proteins.rename.tabular" ftype="tabular" />
>             <param name="old_column" value="1" />
>             <param name="new_column" value="2" />
>             <output name="output_file"
> file="four_human_proteins.rename.fasta" ftype="fasta" />
>         </test>
>         <test>
>             <param name="input_file" value="four_human_proteins.fasta"
> ftype="fasta" />
>             <param name="input_tabular"
> value="four_human_proteins.rename.tabular" ftype="tabular" />
>             <param name="old_column" value="c1" />
>             <param name="new_column" value="c2" />
>             <output name="output_file"
> file="four_human_proteins.rename.fasta" ftype="fasta" />
>         </test>
>     </tests>
> 
> I can retest with the latest galaxy-dist once this issue is resolved:
> http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-May/014557.html
> 
> Peter
> 
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