Hi Thomas, are you interested in implementing it on your own?
I'm not an blast expert, so sorry for the question, but is there an public repository where all unit-counts can be download as wmasker.obinary format, preferable in the correct folder structure as described in http://www.ncbi.nlm.nih.gov/books/NBK1763/. Or do you need to create such files on your own? What we/you probably can do is to create a new windowmasker.loc file pointing to each taxid and add a that new parameter to the wrapper. Cheers, Björn > Hi guys, > > We recently installed NCBI BLAST + to our local Galaxy instance and > now we need to provide the possibility to filter/mask … by taxon id > (taxid) using the command line option (-window_masker_taxid) of BLAST > (cf. http://www.ncbi.nlm.nih.gov/books/NBK1763/) before the job will > be performed in one task. > > > > However searching in the documentation and the mailing list, I did not > find anything about this. > So it would be great to provide the possibility to subselect by taxid > (e.g. NCBI BLAST server http://blast.ncbi.nlm.nih.gov/Blast.cgi) by > changing the BLAST integration. > > We believe this could be of common interest. It would be great if > anybody could comment on this. > > > Thanks a lot, Thomas > > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/