You'll need to wait until the history is ready for download -- i.e., Galaxy provides a .gz file rather than a Webpage at that URL -- before using wget. Galaxy returns a webpage (text/html) while preparing the history for download; this is likely what you are downloading now.
Good luck, J. On Jun 13, 2013, at 4:16 PM, Doan, Ryan wrote: > Hello, > > Several people in our lab would like to download all of their histories from > their respective Galaxy accounts. We tried to download them using the > following steps: > > Select “Export to File” > > Copy the provided link and paste into WGet.exe program as follows: > > wget.exe --no-check-certificate > https://main.g2.bx.psu.edu/history/export_archive?id=e0b0f57abd62f2aa -O > F:\Galaxy\Ryan\rnd003bucknell.edu\Cattle_seq.galaxy > > However, we seem to be getting an error on all files from all of their > accounts and no files are being saved. See below for cmd prompt output. > > Resolving main.g2.bx.psu.edu... 18.104.22.168 > Connecting to main.g2.bx.psu.edu|22.214.171.124|:443... connected. > WARNING: cannot verify main.g2.bx.psu.edu's certificate, issued by > `/C=US/O=Inte > rnet2/OU=InCommon/CN=InCommon Server CA': > Self-signed certificate encountered. > WARNING: certificate common name `bigsky.bx.psu.edu' doesn't match requested > hos > t name `main.g2.bx.psu.edu'. > HTTP request sent, awaiting response... 200 OK > Length: unspecified [text/html] > Saving to: > `C:/Users/RDoan/Documents/Lab_Files/Analysis_Programs/Galaxy/test.txt > > > > Is this the correct method to download histories or is there a better > solution? > > Thank you for your help! > Ryan > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/