Hello Joachim,

What version of Galaxy are your running?  

What does the tool shed paster go show for the 500 Internal Server Error?  

Also, run the following sql manually in your Galaxy database and send the 
results.

select id, tool_shed, name, owner, installed_changeset_revision, status, 
error_message from tool_shed_repository;

Thanks,

Greg Von Kuster


On Jun 14, 2013, at 3:41 AM, Joachim Jacob <joachim.ja...@gmail.com> wrote:

> Hi all, 
> 
> I have developed a tool in our local Galaxy, and imported it in a local 
> toolshed. I next removed the 'dev' version of the tool in Galaxy, and 
> installed it now via het Tool Shed Manager. 
> 
> I got an error that the dependencies could not be installed. If figured it 
> out that it (needed to add an extra shell_command in the tool_dependencies) 
> (and the mount point on my system needs to have exec permissions of course). 
> 
> So I updated the tool in the toolshed. BUT, then I uninstalled the tool from 
> Galaxy, and reinstalled it from the Tool Shed ... instead of just updating. 
> Anyway, it has happened. 
> 
> Now I have the tool listed in my 'Install Tool Shed Repositories', and when I 
> click on it, it says 'this tool is not installed'. The only action I can 
> apply on this installed tool shed repository is 'Install' (...). But clicking 
> on that 'install' button, leads me to an error page (http error 500). 
> 
> ****************************** 
> URL: 
> http://localhost/admin_toolshed/prepare_for_install?tool_shed_url=http://localhost:9009/&repository_ids=84cbaf0b6bf7a1a9&changeset_revisions=fc2339abcab7
>  
> Module weberror.evalexception.middleware:364 in respond view 
> >>  app_iter = self.application(environ, detect_start_response) 
> Module paste.recursive:84 in __call__          view 
> >>  return self.application(environ, start_response) 
> Module paste.httpexceptions:633 in __call__          view 
> >>  return self.application(environ, start_response) 
> Module galaxy.web.framework.base:132 in __call__          view 
> >>  return self.handle_request( environ, start_response ) 
> Module galaxy.web.framework.base:190 in handle_request          view 
> >>  body = method( trans, **kwargs ) 
> Module galaxy.web.framework:221 in decorator          view 
> >>  return func( self, trans, *args, **kwargs ) 
> Module galaxy.webapps.galaxy.controllers.admin_toolshed:825 in 
> prepare_for_install          view 
> >>  raw_text = common_util.tool_shed_get( trans.app, tool_shed_url, url ) 
> Module tool_shed.util.common_util:110 in tool_shed_get          view 
> >>  response = urlopener.open( uri ) 
> Module urllib2:397 in open          view 
> >>  response = meth(req, response) 
> Module urllib2:510 in http_response          view 
> >>  'http', request, response, code, msg, hdrs) 
> Module urllib2:435 in error          view 
> >>  return self._call_chain(*args) 
> Module urllib2:369 in _call_chain          view 
> >>  result = func(*args) 
> Module urllib2:518 in http_error_default          view 
> >>  raise HTTPError(req.get_full_url(), code, msg, hdrs, fp) 
> HTTPError: HTTP Error 500: Internal Server Error 
> ************************************ 
> 
> The same happens when I go to the Tool Shed, and try to install the tool from 
> there: Galaxy detects that the tool has been installed before, and points me 
> to that 500 error page. 
> 
> Any help is heartily appreciated, 
> 
> Thanks, 
> Joachim 
> 
> -- 
> Joachim Jacob 
> Contact details: http://www.bits.vib.be/index.php/about/80-team 
> -- 
> @joachimjacob
> ___________________________________________________________
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