> I am trying to integrate a tool that is written in java into galaxy.
> The following is what I've done.
> 1) Created a directory inside /tools directory and put my xml and runnable
> jar file in it.
> 2) Linked the xml file in 'tool_conf.xml'.
> <section name="sample tool" id="sample_tool">
> <tool file="Sample/sample.xml"/>
> <tool id="sample" name="Compute correlation">
> <command>java -jar sample.jar</command>
> *sample.java* (exported into a runnable jar file from eclipse)
> package Sample;
> public class Sample
> public static void main(String args)
> System.out.println("Hello world this is important");
> When I run the above, (i.e when I click on execute in the middle pane),
> nothing gets added to my current history. Since there is no visual output
> of any sort, I am not able to figure out where the problem lies.
> Any help or pointer is appreciated!
> Thanks y'all!
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