Hi Saket,
First of all thanks a lot for your really quick reply. To sum it up: you
were right.
After ensuring the SSH out (works) your comments led me to the idea to
test the 'hg clone' command with a user account, which is neither root
nor galaxy. These two are local users, while my personal account is from
a LDAP server. Your hint to include username and password into the
http:proxy variable was the key: only LDAP users seem to be allowed to
pass the proxy or better: if those users are already logged in, username
and password are already implicitly deposited.
Thus, the cloning process as the LDAP user (did not want to store the
foreign username/password explicitly in the galaxy user files) worked,
although I get this message:
"*** failed to import extension hgext.imerge: no module named imerge"
(once at the process' beginning and once at the end)
Anyway, this seems to be more a warning than an error. I found
possibility to silence it, but would like to understand what the missing
may cause.
Any clue, anyone?
Saket Choudhary schrieb:
You might want to ssh out and check if that is allowed. If you can ssh
out,
you should be able to clone from bitbucket ssh too [ Though you might
not be able to push, depending on whether or not you own the repository]
On 18 June 2013 19:59, Saket Choudhary <sake...@gmail.com
<mailto:sake...@gmail.com>> wrote:
Hi Sebastian,
I work behind a proxy too(In my case I have to supply a username
and password too )
I have the following thins setup in my ~/.bashrc:
export http_proxy= http://username:password@proxy-url:proxy-port/
then source it:
$ source ~/.bashrc
or maybe relogin .
and the .hgrc settings that you have specified usually work for
me smoothly.
Here are few links that I remember using . I am no longer behind a
proxy , so would not be able to verify this now, Though I remember
pushing and pulling from behind proxy using the above settings
1.
http://www.jameswampler.com/2010/06/10/configure-mercurial-hg-to-use-a-proxy-server/
2.http://stackoverflow.com/questions/8991608/configuration-for-using-mercurial-with-bitbucket-from-behind-a-certificate-rewri
On 18 June 2013 19:48, Sebastian Schaaf
<sch...@ibe.med.uni-muenchen.de
<mailto:sch...@ibe.med.uni-muenchen.de>> wrote:
Hi all,
I'm currently trying to set up a galaxy-dist instance on a
SLES server within an 'encapsulated' network (hospital
environment; here all sensitive data is stored and handled).
Within this network, clients are only capable of accessing the
internet via HTTP/HTTPS and FTP, using a proxy - adress and
port (8080) are the same for all three protocols.
Mercurial (which I had to set up in advance) is accessible and
more or less in default configuration (more on that down below).
What I get after executing the command 'hg clone
https://bitbucket.org/galaxy/galaxy-dist#stable'
is
"abort: error: _ssl.c:491: error:140700FC:SSL
routines:SSL23_GET_SERVER_HELLO:unknown protocol"
Google search indicates something more general, so outside the
exclusive scope of Galaxy. On top, no connection to Galaxy was
listed, also not in this mailing list's archive.
Following some hints I just tried to set the proxy via a
'.hgrc' file in the galaxy user home like this:
---
[http_proxy]
host = url:port
[https_proxy]
host = url:port
---
(re-login after that) and also set the system variables
'$http_proxy' and '$https_proxy'. Another approach described
was to call
'hg --config http_proxy.host=url:port clone
https://bitbucket.org/galaxy/galaxy-dist#stable'
Nothing worked out.
Does anyone experienced similar behaviour or has got some
ideas how to solve this?
Thanks in advance,
Sebastian
--
Sebastian Schaaf, M.Sc. Bioinformatics
University of Munich
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--
Sebastian Schaaf, M.Sc. Bioinformatics
Faculty Coordinator NGS Infrastructure
Chair of Biometry and Bioinformatics
Department of Medical Informatics,
Biometry and Epidemiology (IBE)
University of Munich
Marchioninistr. 15, K U1 (postal)
Marchioninistr. 17, U 006 (office)
D-81377 Munich (Germany)
Tel: +49 89 2180-78178
___________________________________________________________
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