> Error running cuffdiff. [12:48:21] Loading reference annotation.
> Warning: No conditions are replicated, switching to 'blind' dispersion method
> [12:48:33] Inspecting maps and determining fragment length distributions.
> terminate called after throwing an instance of
> what(): boost::thread_resource_error: Resource temporarily unavailable
This is a linkage error with the Boost library; you might need to modify the
Boost path and then recompile Cufflinks. That said, I don't recommend compiling
from source unless needed; the Cufflinks suite is provided precompiled for many
Getting the Cufflinks suite working and getting it working with Galaxy are two
different things. I recommend:
(a) getting Cufflinks working from the command line first using the tutorial:
(b) doing the tutorial in Galaxy;
(c) using your own data with Cufflinks in Galaxy.
Cufflinks can run very slow, especially if using a limited number of threads,
so long running time is not necessarily an indication of error.
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: