Am Dienstag, den 25.06.2013, 19:15 +0800 schrieb shashi shekhar:
> Hi Björn,
> 
> 
> Thanks Björn for the reply ,
> 
> 
> But pdb file format is working not working auto option ..it works with
> by selecting PDB file format option in galaxy ...
> do i have to modify any registry.py file or any other file ?  i have
> included only init ,init_meta  and sniff  function  in PDB ( txt ) in
> data.py file ..

Yes you have to modify the registry.py file. And you need to take care
of the order of registered sniffers, these are crucial.

Or you just install these data types from my tool shed repository :)

Cheers,
Bjoern

> Regards
> shahsi
> 
> 
> 
> ______________________________________________________________________
> From: Björn Grüning <bjoern.gruen...@pharmazie.uni-freiburg.de>
> To: shashi shekhar <me_shash...@yahoo.co.in> 
> Cc: Peter Cock <p.j.a.c...@googlemail.com>; Galaxy Dev
> <galaxy-...@bx.psu.edu> 
> Sent: Tuesday, 25 June 2013 3:40 PM
> Subject: Re: [galaxy-dev] How to enable auto option for newly added
> file formats
> 
> 
> Hi Shashi,
> 
> can you try my molecule datatype repository?
> 
> http://testtoolshed.g2.bx.psu.edu/view/bgruening/chemical_datatypes
> 
> The source is here:
> https://github.com/bgruening/galaxytools/blob/master/chemicaltoolbox/datatypes/molecules.py
> 
> I have also a PDB definition inluded maybe that works for you and we
> can
> join the effort.
> 
> Thanks,
> Bjoern
> 
> 
> 
> > Hi,
> > yeah i followd this tutorial ..
> > http://wiki.galaxyproject.org/Admin/Datatypes/Adding%20Datatypes
> > 
> > yeah ,i have tested  my sniff methods .it works fine .when i upload
> > any pdb file by using  the option file format (PDB ) , it works  but
> > with auto option it doesnot work ........
> > regards
> > shashi
> > 
> > 
> > 
> >
> ______________________________________________________________________
> > From: Peter Cock <p.j.a.c...@googlemail.com>
> > To: shashi shekhar <me_shash...@yahoo.co.in> 
> > Cc: Galaxy Dev <galaxy-...@bx.psu.edu> 
> > Sent: Tuesday, 25 June 2013 1:14 PM
> > Subject: Re: [galaxy-dev] How to enable auto option for newly added
> > file formats
> > 
> > 
> > On Tue, Jun 25, 2013 at 8:28 AM, shashi shekhar
> > <me_shash...@yahoo.co.in> wrote:
> > > Hi,
> > >
> > > yeah ..it is same thing... but i followed the  galaxy
> -datatype(how
> > to add
> > > new file format)tutorial ..but still  my newly added file format
> is
> > not
> > > working with auto option ....it always display txt format ..it is
> > similar to
> > > txt format with some specific property ..
> > >
> > > Reagrds
> > > shashi
> > 
> > So you've followed this:
> > http://wiki.galaxyproject.org/Admin/Datatypes/Adding%20Datatypes
> > 
> > Have you tested your sniff method works? Have you checked the
> > order the file types are tested?
> > 
> > Peter
> > 
> > P.S. Don't forget to CC the mailing list.
> > 
> > 
> > 
> > ___________________________________________________________
> > Please keep all replies on the list by using "reply all"
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> > 
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> 
> 
> 
> 
> 
> 



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