When I install from binary files the boost problem doesn't go away and I
get one extra error message in the beginning.
Error running cuffdiff. cuffdiff: /usr/lib64/libz.so.1: no version
information available (required by cuffdiff)
[14:51:54] Loading reference annotation.
Warning: No conditions are replicated, switching to 'blind' dispersion method
[14:52:05] Inspecting maps and determining fragment length distributions.
terminate called after throwing an instance of
When I inspect the file libz.so.1 I get a symbolic link to another file,
libz.so.1.2.3 which appears in the same directory.
[@]# file /usr/lib/libz.so.1
/usr/lib/libz.so.1: symbolic link to `libz.so.1.2.3'
[@]# file /usr/lib/libz.so.1.2.3
/usr/lib/libz.so.1.2.3: ELF 32-bit LSB shared object, Intel 80386, version
1 (SYSV), stripped
On Mon, Jun 24, 2013 at 8:15 PM, Jeremy Goecks <jeremy.goe...@emory.edu>wrote:
> Error running cuffdiff. [12:48:21] Loading reference annotation.
> Warning: No conditions are replicated, switching to 'blind' dispersion method
> [12:48:33] Inspecting maps and determining fragment length distributions.
> terminate called after throwing an instance of
> what(): boost::thread_resource_error: Resource temporarily unavailable
> This is a linkage error with the Boost library; you might need to modify
> the Boost path and then recompile Cufflinks. That said, I don't recommend
> compiling from source unless needed; the Cufflinks suite is provided
> precompiled for many platforms.
> Getting the Cufflinks suite working and getting it working with Galaxy are
> two different things. I recommend:
> (a) getting Cufflinks working from the command line first using the
> (b) doing the tutorial in Galaxy;
> (c) using your own data with Cufflinks in Galaxy.
> Cufflinks can run very slow, especially if using a limited number of
> threads, so long running time is not necessarily an indication of error.
> Good luck,
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