Howdy,
One of our users is running the eXpress package under NGS: RNA
Analysis -> eXpress -- galaxy/dist/tools/ngs_rna/express_wrapper.*
I noticed the syntax for express_wrapper.xml has the following:
<requirement type="binary">eXpress</requirement>
any reason why it was set to that, as opposed to:
<requirement type="package">eXpress</requirement>
In our setup, we need to source the env.sh file for express to setup
the correct environmental variables. Changing from binary to package
has not solved this and re-running the job never sources our env.sh
file.
What am I doing wrong?
My tool dependency directory looks like so:
galaxy/dist/tool_dependency/eXpress/
|---default --> 1.3.0
|----1.3.0/env.sh
Thanks,
-Adam
--
Adam Brenner
Computer Science, Undergraduate Student
Donald Bren School of Information and Computer Sciences
Research Computing Support
Office of Information Technology
http://www.oit.uci.edu/rcs/
University of California, Irvine
www.ics.uci.edu/~aebrenne/
aebre...@uci.edu
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