ignore this last post
On Jun 27, 2013, at 3:09 PM, Robert Baertsch wrote:

> I submitted a workflow that in turn submits a drm job to sun grid engine.
> 
> The queue had an error (probably due to a problem with automount). 
> 
> Traceback (most recent call last):
>  File "/inside/depot4/galaxy/lib/galaxy/jobs/runners/__init__.py", line 60, 
> in run_next
>    method(arg)
>  File "/inside/depot4/galaxy/lib/galaxy/jobs/runners/drmaa.py", line 169, in 
> queue_job
>    external_job_id = self.ds.runJob(jt)
>  File "/inside/depot4/galaxy/eggs/drmaa-0.4b3-py2.7.egg/drmaa/__init__.py", 
> line 331, in runJob
>    _h.c(_w.drmaa_run_job, jid, _ct.sizeof(jid), jobTemplate)
>  File "/inside/depot4/galaxy/eggs/drmaa-0.4b3-py2.7.egg/drmaa/helpers.py", 
> line 213, in c
>    return f(*(args + (error_buffer, sizeof(error_buffer))))
>  File "/inside/depot4/galaxy/eggs/drmaa-0.4b3-py2.7.egg/drmaa/errors.py", 
> line 90, in error_check
>    raise _ERRORS[code-1]("code %s: %s" % (code, error_buffer.value))
> DeniedByDrmException: code 17: error: no suitable queues
> 
> When the sysadmin cleared the error, the job started running normally after 
> being in an error state for 10 minutes.
> 
> The cool thing is that galaxy kept running without a problem.
> 
> galaxy.jobs.runners.drmaa DEBUG 2013-06-27 14:51:22,968 (10481/4767487) state 
> change: job is running
> galaxy.jobs.runners.drmaa DEBUG 2013-06-27 15:00:23,628 (10481/4767487) state 
> change: job is queued and active
> galaxy.jobs.runners.drmaa DEBUG 2013-06-27 15:00:27,751 (10481/4767487) state 
> change: job is running
> 
> 
> However in the history panel, the job shows as queued but not running, even 
> if I refresh the history panel.
> 
> Is this normal or should the status change to running?
> 
> I'm using this version of straight galaxy:
> 
> changeset:   10162:f295092476c7
> branch:      stable
> parent:      10160:2efb1083676b
> user:        Dannon Baker <dannonba...@me.com>
> date:        Sat Jun 15 09:08:09 2013 -0400
> summary:     Fix reports import issue reported by Lance, 
> https://trello.com/card/bug-in-reports-webapp-imports/506338ce32ae458f6d15e4b3/943
> 
> 
> -Robert Baertsch
> UC Santa Cruz
> 
> 


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