While I never got a reply to this, I did continue trying to figure it out and ended up doing a fresh install on our system and there histories worked. After a bit of back and forth with upgrading the previous install and database the issue appears to be with subtle changes to the universe_wsgi.ini file and starting with a fresh one that came with the new distribution, and then modifying that to suit our environment resulted in an upgrade where histories worked.
Shane On 27/06/2013, at 4:00 AM, galaxy-dev@lists.bx.psu.edu wrote: > > I've tried updating a couple of times to the latest stable release and each > time I find that I can no longer see my saved histories. Roll back my machine > to an earlier snapshot and it is fine. The thing that may be different about > our system is that we're using Apache authentication rather than using the > built in accounts. Nothing about the apache install has changed, just do the > update to the June release, start it, run the manage_db.sh upgrade and > restart (database is on postgres by the way) and then saved histories is > empty and creating new histories never populates the list either. I would > like to upgrade since the previous release had issues with sending BAM files > to UCSC which this update has fixed. > > Maybe it's related to the upgraded SQLAlchemy? > > Shane -- For urgent cases, contact supp...@biomatters.com Dr Shane Sturrock shane.sturr...@biomatters.com Senior Scientist Tel: +64 (0) 9 379 5064 76 Anzac Ave Auckland New Zealand
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