It works!  Thanks!  And--getting back to the original request--it doesn't
have the multiplexing button anymore after setting it as avalable: false.
 Awesome!


On Tue, Jul 2, 2013 at 7:19 PM, Brad Chapman <chapm...@50mail.com> wrote:

>
> Lee;
> I pushed a fix to the nglims fork on bitbucket which should resolve this
> errors. Apologies, the nglims error is a mistake on my part. The way
> Galaxy handles version updates changed a bit on the infrastructure side
> and I hadn't coded correctly to handle all the cases.
>
> You shouldn't need to restart and lose all your data. I think you're
> nearly there with the upgrade. More details below and thanks for all the
> patience.
>
> > 114 -> 115...
> [...]
> > OperationalError: (OperationalError) there is already another table or
> > index with this name: migration_tmp u'ALTER TABLE galaxy_user R
> >
> >               ENAME TO migration_tmp' ()
>
> This is the same error as before, so needs the same hack to work around:
>
> $ sqlite3 database/universe.sqlite
> sqlite> drop table migration_tmp;
>
> Sorry about that one, not sure exactly how to fix this more cleanly.
>
> > 115 -> 116...
> >
> > Tables for a next generation sequencing lims tied to requests.
> [...]
> > sqlalchemy.exc.InvalidRequestError: Table 'sample_request_map' is already
> > defined for this MetaData instance.  Specify 'extend_existin
> >
> >             g=True' to redefine options and columns on an existing Table
> > object.
>
> This is my bug mentioned above, so should work with an updated checkout
> of the code.
>
> Hope this gets you there. Fingers crossed,
> Brad
>



-- 
Lee Katz, Ph.D.
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