I am a new user to Galaxy. Recently I uploaded a bed file to Galaxy and
then converted it to hg18 format in order to run a phastCons scoring on
it. The fields returned were all NaN, though. I then converted the hg18
format to hg17 in order to see if that would make a difference, but it
still returned NaN each time. At this point, in order to test if it was
simply my data that had a problem, I found and viewed a specific region
in the UCSC genome browser to verify that it did, in fact, include
regions with conservation, I entered that sequence into Galaxy in bed
format and attempted to get phastCons scores for it, but still received
NaN for the results. At this point, I have no idea what is going on. I
believe that this must be a bug, since I am fairly certain that my bed
files are in the correct format.
All of these were run on the main Galaxy server on and off during the
past week. If anyone could help me figure out what is wrong, I would
appreciate it very much.
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