You'll need to make sure that bedtools is in your Galaxy user's path.

Best,
J.

On Jul 9, 2013, at 6:40 PM, Perez, Ricardo wrote:

> Dear all,
> 
> As I was trying to do visualize my data set in trackster, I get the following 
> error:
> 
> /bin/sh: 1: bedtools: not found
> sort: fflush failed: standard output: Broken pipe
> sort: write error
> needLargeMem: trying to allocate 0 bytes (limit: 100000000000)
> 
> When doing a sudo find / -name "bedtools" in my system, I get the following 
> output:
> /usr/share/bedtools 
> /usr/share/doc/bedtools
> 
> Do I have bedtools installed in the wrong place?
> 
> Thank you for your help,
> --Ricardo Perez
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