> bedtools genomecov -bg -split -i stdin -g 
> /usr/local/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/hg19.len
> However this crashes.  After looking in my computer, I find that bedtools do 
> not contain the file genomecov.  Is this an erroneous assumption of mine or 
> have I installed something wrong?

genomecov is not a file, it is a parameter that indicates what operation to 
run. My guess is that you may have an old version of BEDtools installed; in 
this case, you'll need to update BEDtools. At minimum, BEDtools versions 2.15+ 
will work fine with Trackster/Galaxy.

You can type this into your terminal to see the BEDtools version:

bedtools --version

Good luck,

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