> bedtools genomecov -bg -split -i stdin -g
> However this crashes. After looking in my computer, I find that bedtools do
> not contain the file genomecov. Is this an erroneous assumption of mine or
> have I installed something wrong?
genomecov is not a file, it is a parameter that indicates what operation to
run. My guess is that you may have an old version of BEDtools installed; in
this case, you'll need to update BEDtools. At minimum, BEDtools versions 2.15+
will work fine with Trackster/Galaxy.
You can type this into your terminal to see the BEDtools version:
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: