I am a beginner of Galaxy.Because I need to analyze large-scale deep-seq
data and the pubic Galaxy serve did not work out,I installed linux(the
first time to use linux) and set up the local galaxy instance in my
computer. It seemed everything worked fine until I tried to use Tophat to
align the reads to the reference genome.The problem is although I have
already downloaded the Refgenome from UCSC,when I use the Tophat,"select a
reference genome"option is empty.
is there anybody having similar problem?How to deal with it?

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