Dear Developers,

I am GATK (beta ) Unified Genotyper module to get the indels and SNP.

I placed the jar file in (/galaxy-dist/tool-data/shared/jars/gatk) and i
link the reference genome in .loc file (gatk_sorted_picard_index.loc). I
could see the Name i mentioned in the .loc file is appearing in the galaxy
page while choosing the Reference genome.

Now while running GATK in galaxy , The command runs for a while and gives
ERROR as  i am getting ERROR as *(The fasta file you specified
(/tmp/tmp-gatk-Jjg9Mi) does not exist.)*

Could anybody suggest on the same..

Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to