Here are a couple of questions on rsync:
1. the amount of files for hg19 and mm9 is extremely different (over 600 vs. 88
Gb) - why is that so? They are both mammalian genomes ... are there redundant
files in hg19, is mm9 incomplete...?
2. if I list the directories for hg19 and mm9, there seems to be a group of
files for bowtie2 in hg19, but not in mm9 - where are the ones for mm9?
3. genome sequences such as mm9.fa are not in /indexes, there are only pointers
(mm9/bowtie_index/mm9.fa -> ../seq/mm9.fa ) can the sequence files be 'rsync'ed
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