Dave,

Also, when I click on:

"Get repository update"

I get the following error:
##########################################################
URL: 
http://galaxy.tamu.edu/admin_toolshed/check_for_updates?id=ff08d6222f8e14990ad98c3bdd778cf31920e6108c41c80f
File 
'/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py',
line 149 in __call__
  app_iter = self.application(environ, sr_checker)
File 
'/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py',
line 84 in __call__
  return self.application(environ, start_response)
File 
'/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py',
line 633 in __call__
  return self.application(environ, start_response)
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py',
line 132 in __call__
  return self.handle_request( environ, start_response )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py',
line 190 in handle_request
  body = method( trans, **kwargs )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py',
line 221 in decorator
  return func( self, trans, *args, **kwargs )
File 
'/usr/local/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
line 202 in check_for_updates
  repository = suc.get_installed_tool_shed_repository( trans, repository_id )
File '/usr/local/galaxy/galaxy-dist/lib/tool_shed/util/shed_util_common.py',
line 515 in get_installed_tool_shed_repository
  return trans.sa_session.query( trans.model.ToolShedRepository ).get(
trans.security.decode_id( id ) )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/security/__init__.py',
line 60 in decode_id
  return int( self.id_cipher.decrypt( obj_id.decode( 'hex' ) ).lstrip( "!" ) )
ValueError: invalid literal for int() with base 10: 'cb73864b36ce6a1b'

##########################################################

Thanks

--R

On Thu, Aug 1, 2013 at 9:44 AM, Dave Bouvier <d...@bx.psu.edu> wrote:
> Rodolfo,
>
> In order to simplify tracking down this issue, could you provide the
> changeset revision of Galaxy that is running on tamu.edu? To retrieve the
> revision, execute the following command in your galaxy root directory:
>
> hg id
>
> To clarify, our understanding is that you installed the ncbi_blast_plus
> repository from the main tool shed, and it installed correctly. You then
> uninstalled the repository, and it also uninstalled properly. You then
> attempted to reinstall the repository, and encountered the error message
> cited in your email.
>
> Can you confirm the above?
>
> We further understand that the repository is stuck in the 'installing'
> state. What options are available from the popup menu next to the
> ncbi_blast_plus repository on the manage installed repositories page? If
> 'Deactivate or uninstall' is available, can you try uninstalling again, and
> see if that functions correctly?
>
>    --Dave B.
>
>
> On 8/1/13 07:38:22.000, Rodolfo Aramayo wrote:
>>
>> People,
>>
>> I successfully installed NCBI_Blast_Plus from the toolshed
>> The tool, however, failed to work giving the following error:
>>
>> Fatal error: Exit code 255 ()
>> Error: NCBI C++ Exception:
>>
>> "/usr/local/galaxy/galaxy-dist/database/tmp/tmpwL5OFq/ncbi-blast-2.2.26+-src/c++/src/corelib/ncbiobj.cpp",
>> line 689: Critical: ncbi::CObject::ThrowNullPointerException() -
>> Attempt to access NULL pointer.
>>
>> I then tried uninstalling/reinstalling the tool
>>
>> However I now get an eternal 'installing' grey message and when I
>> click 'manage the repo' I get:
>>
>> #########
>>
>> URL:
>> http://galaxy.tamu.edu/admin_toolshed/manage_repository?id=ff08d6222f8e14990ad98c3bdd778cf31920e6108c41c80f
>> File
>> '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py',
>> line 149 in __call__
>>    app_iter = self.application(environ, sr_checker)
>> File
>> '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py',
>> line 84 in __call__
>>    return self.application(environ, start_response)
>> File
>> '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py',
>> line 633 in __call__
>>    return self.application(environ, start_response)
>> File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py',
>> line 132 in __call__
>>    return self.handle_request( environ, start_response )
>> File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py',
>> line 190 in handle_request
>>    body = method( trans, **kwargs )
>> File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py',
>> line 221 in decorator
>>    return func( self, trans, *args, **kwargs )
>> File
>> '/usr/local/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
>> line 561 in manage_repository
>>    repository = suc.get_installed_tool_shed_repository( trans,
>> repository_id )
>> File
>> '/usr/local/galaxy/galaxy-dist/lib/tool_shed/util/shed_util_common.py',
>> line 515 in get_installed_tool_shed_repository
>>    return trans.sa_session.query( trans.model.ToolShedRepository ).get(
>> trans.security.decode_id( id ) )
>> File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/security/__init__.py',
>> line 60 in decode_id
>>    return int( self.id_cipher.decrypt( obj_id.decode( 'hex' ) ).lstrip(
>> "!" ) )
>> ValueError: invalid literal for int() with base 10: 'cb73864b36ce6a1b'
>>
>> #########
>>
>> How can I totally uninstall and re-install this tool?
>>
>> Thanks
>> ___________________________________________________________
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>    http://lists.bx.psu.edu/
>>
>> To search Galaxy mailing lists use the unified search at:
>>    http://galaxyproject.org/search/mailinglists/
>>
>
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to