The statement "there are still issues with the Tool Shed itself" is not confirmed, correct? I believe we're still waiting on the response to Dave's initial response below. Or did I miss it???
On Thu, Aug 1, 2013 at 9:44 AM, Dave Bouvier <d...@bx.psu.edu> wrote: > Rodolfo, > > In order to simplify tracking down this issue, could you provide the > changeset revision of Galaxy that is running on tamu.edu? To retrieve the > revision, execute the following command in your galaxy root directory: > > hg id > > To clarify, our understanding is that you installed the ncbi_blast_plus > repository from the main tool shed, and it installed correctly. You then > uninstalled the repository, and it also uninstalled properly. You then > attempted to reinstall the repository, and encountered the error message > cited in your email. > > Can you confirm the above? > > We further understand that the repository is stuck in the 'installing' > state. What options are available from the popup menu next to the > ncbi_blast_plus repository on the manage installed repositories page? If > 'Deactivate or uninstall' is available, can you try uninstalling again, and > see if that functions correctly? > > --Dave B. On Aug 5, 2013, at 2:35 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > On Mon, Aug 5, 2013 at 6:50 PM, Rodolfo Aramayo <raram...@tamu.edu> wrote: >> Dear Peter, >> >> APOLOGIES for the delayed response >> >> Please see below for details...... >> > > OK, so there are still issues with the Tool Shed itself, > but the BLAST issue seems to have gone away when > using a newer version (compiled). I'm working on using > the NCBI provided binaries if possible, but updating > the Galaxy BLAST+ bundle to a newer version of > the underlying BLAST tools is planned. > > Thanks, > > Peter > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/
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