Greg, Please see my previous responses to Dave I believe there are issues with the Tool Shed itself
Thanks --R On Mon, Aug 5, 2013 at 1:42 PM, Greg Von Kuster <g...@bx.psu.edu> wrote: > The statement "there are still issues with the Tool Shed itself" is not > confirmed, correct? I believe we're still waiting on the response to Dave's > initial response below. Or did I miss it??? > > On Thu, Aug 1, 2013 at 9:44 AM, Dave Bouvier <d...@bx.psu.edu> wrote: > > Rodolfo, > > In order to simplify tracking down this issue, could you provide the > changeset revision of Galaxy that is running on tamu.edu? To retrieve the > revision, execute the following command in your galaxy root directory: > > hg id > > To clarify, our understanding is that you installed the ncbi_blast_plus > repository from the main tool shed, and it installed correctly. You then > uninstalled the repository, and it also uninstalled properly. You then > attempted to reinstall the repository, and encountered the error message > cited in your email. > > Can you confirm the above? > > We further understand that the repository is stuck in the 'installing' > state. What options are available from the popup menu next to the > ncbi_blast_plus repository on the manage installed repositories page? If > 'Deactivate or uninstall' is available, can you try uninstalling again, and > see if that functions correctly? > > --Dave B. > > > > On Aug 5, 2013, at 2:35 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > > On Mon, Aug 5, 2013 at 6:50 PM, Rodolfo Aramayo <raram...@tamu.edu> wrote: > > Dear Peter, > > APOLOGIES for the delayed response > > Please see below for details...... > > > OK, so there are still issues with the Tool Shed itself, > but the BLAST issue seems to have gone away when > using a newer version (compiled). I'm working on using > the NCBI provided binaries if possible, but updating > the Galaxy BLAST+ bundle to a newer version of > the underlying BLAST tools is planned. > > Thanks, > > Peter > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
