I have added an feature request issue on galaxy-extras to support this.

Earlier this year, Hagai Cohen was exploring the existing Galaxy tools
and it seems like some of them expect dataset files to end with .dat.
So I reworked the multiple file dataset stuff so each of the
individual parts ended that way, it is probably the best changeset to
look at if you are considering changing the naming behavior associated
with multiple file datasets.

https://bitbucket.org/msiappdev/galaxy-extras/commits/1a93fba38e74f9a307b62c683d2f4ba9128ee121

-John


On Tue, Jul 30, 2013 at 9:15 PM,  <alex.khassa...@csiro.au> wrote:
> Hi guys,
>
>
>
> We've been using Galaxy for a year now, we created our own Galaxy fork where
> we were making changes to adapt Galaxy to our requirements.  As we need
> "multiple file dataset" - we were using Johns' fork for that initially.
>
>
>
> Now we are trying to use "The most updated version of the multiple file
> dataset stuff" https://bitbucket.org/msiappdev/galaxy-extras/ directly as we
> don't want to maintain our own version.
>
>
>
> One of the problems we have - when we upload multiple files - their file
> names are changed (_task_%d suffix is added to their names).
>
>
>
> On our branch we simply removed the code which does it, but now we wonder if
> it is possible to avoid this renaming somehow? I.e. make it configurable?
>
>
>
> Is it really necessary to change the file names?
>
>
>
> -Alex
>
>
>
> -----Original Message-----
> From: galaxy-dev-boun...@lists.bx.psu.edu
> [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Jorrit Boekel
> Sent: Thursday, 25 October 2012 8:35 PM
> To: Peter Cock
> Cc: galaxy-dev@lists.bx.psu.edu
> Subject: Re: [galaxy-dev] the multi job splitter
>
>
>
>
>
> I keep the files matched by keeping a _task_%d suffix to their names. So
> each task is matched with its correct counterpart with the same number.
>
>
>
> cheers,
>
> jorrit
>
>
>
>
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