Hi Peter, This is a known issue ( not a Tool Shed issue, but a Galaxy issue ) related to the Select list that gets automatically populated with the "Select one" option. You have to actually click the x" on this option to eliminate it. Again, this feature is inherited from Galaxy, so it's not specific to the tool shed. I haven't had time to track it down and fix it since I'm under water with just the tool shed.
Greg Von Kuster On Aug 7, 2013, at 11:12 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > Hi Greg, Dave, > > While logged into the Test Tool Shed as 'iuc', I just created > a new (empty) repository: > http://testtoolshed.g2.bx.psu.edu/view/iuc/package_blast_plus_2_2_26 > > See background discussion on this thread: > http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-August/015890.html > > As 'iuc', I then tried to grant write access to myself ('peterjc') > and Bjoern ('bgruening') as we are both IUC members and > working on the Galaxy BLAST+ project: > https://github.com/peterjc/galaxy_blast > > The default dummy entry "Select One" entry was still being > displayed. I clicked 'Grant Access' and got this error: > > Internal Server Error > Galaxy was unable to sucessfully complete your request > > URL: > http://testtoolshed.g2.bx.psu.edu/repository/manage_repository?id=2f85dfc5735b60ae > Module galaxy.web.framework.middleware.error:149 in __call__ >>> app_iter = self.application(environ, sr_checker) > Module paste.debug.prints:106 in __call__ >>> environ, self.app) > Module paste.wsgilib:543 in intercept_output >>> app_iter = application(environ, replacement_start_response) > Module paste.recursive:84 in __call__ >>> return self.application(environ, start_response) > Module paste.httpexceptions:633 in __call__ >>> return self.application(environ, start_response) > Module galaxy.web.framework.base:132 in __call__ >>> return self.handle_request( environ, start_response ) > Module galaxy.web.framework.base:190 in handle_request >>> body = method( trans, **kwargs ) > Module galaxy.web.framework:98 in decorator >>> return func( self, trans, *args, **kwargs ) > Module galaxy.webapps.tool_shed.controllers.repository:2072 in > manage_repository >>> user = trans.sa_session.query( trans.model.User ).get( >>> trans.security.decode_id( user_id ) ) > Module galaxy.web.security:60 in decode_id >>> return int( self.id_cipher.decrypt( obj_id.decode( 'hex' ) ).lstrip( "!" ) ) > Module encodings.hex_codec:42 in hex_decode >>> output = binascii.a2b_hex(input) > TypeError: Non-hexadecimal digit found > extra data > > full traceback > > text version > > This may be an intermittent problem due to load or other unpredictable > factors, reloading the page may address the problem. > > -- > > I tried again but explicitly removed the dummy entry "Select One" > and it seemed to have worked. > > I am running Firefox v22.0 on Mac OS X. > > Regards, > > Peter > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/