On Wed, Aug 7, 2013 at 5:11 PM, Bjoern Gruening
<bjoern.gruen...@gmail.com> wrote:
> Hi Peter,
>
>> Now, back in ncbi_blast_plus, I have revised the
>> repository_dependencies.xml to declare this new
>> repository dependency (the revision tag etc is missing
>> to mean the latest version at upload is used):
>
> Mh, I never tried that but I think that will not work. The blast
> datatypes are ok to be included in repository_dependency.xml but the
> package_blast_plus needs to be in tool_dependency.xml, imho.
>
> <?xml version="1.0"?>
> <tool_dependency>
>     <package name="blast+" version="2.2.26+">
>         <repository name="package_blast_plus_2_2_26" owner="iuc" />
>     </package>
> </tool_dependency>
>
> If you have that you do not need to change your tools.
>
> Hopefully I'm correct.
> Bjoern

I think you're right, certainly that is how this example works:
http://toolshed.g2.bx.psu.edu/view/jjohnson/samtools_filter

So I don't need this in my repository_dependencies.xml
after all...

Thanks,

Peter
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