Yeah, nothing happens after SGE gets to the running state. The directory 
structure of the old ami does not appear in /mnt. The log was posted in the 
following thread:

"Cloudman - When will the symlinks be resolved ?"

Additionally, I am not sure what you mean by, "This will not be the same issue 
as the tool volume update.".

Thanks


________________________________
From: Dannon Baker [dannon.ba...@gmail.com]
Sent: Thursday, August 08, 2013 4:40 PM
To: Ravpreet Setia
Cc: Ulyanov_Anatoly; galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Galaxy on cloud config issues

Ravpreet -- can you provide details as to what's failing for you?

If I remember correctly, you had an odd issue where nothing was actually 
appearing at /mnt, right?  This will not be the same issue as the tool volume 
update.


On Thu, Aug 8, 2013 at 4:36 PM, Ravpreet Setia 
<ravpreet.se...@oicr.on.ca<mailto:ravpreet.se...@oicr.on.ca>> wrote:
Anatoly, did this method work for you? It is not working for me.
________________________________
From: 
galaxy-dev-boun...@lists.bx.psu.edu<mailto:galaxy-dev-boun...@lists.bx.psu.edu> 
[galaxy-dev-boun...@lists.bx.psu.edu<mailto:galaxy-dev-boun...@lists.bx.psu.edu>]
 on behalf of Dannon Baker 
[dannon.ba...@gmail.com<mailto:dannon.ba...@gmail.com>]
Sent: Wednesday, August 07, 2013 8:00 PM
To: Ulyanov_Anatoly
Cc: galaxy-dev@lists.bx.psu.edu<mailto:galaxy-dev@lists.bx.psu.edu>
Subject: Re: [galaxy-dev] Galaxy on cloud config issues

A new tools volume will be released shortly.  For now, you can launch the 
previous cloudman release using the following:

https://main.g2.bx.psu.edu/cloudlaunch?ami=ami-da58aab3&bucket_default=gxy-workshop


On Wed, Aug 7, 2013 at 7:42 PM, Ulyanov_Anatoly 
<ulyanov_anat...@allergan.com<mailto:ulyanov_anat...@allergan.com>> wrote:
Hello,

Does anybody use the last Galaxy image? I am running Galaxy image on EC2:

Instance ID         i-1b2d3773
Image ID (AMI) ami-118bfc78

It looks as those three tools have configuration problems:

EBOSS
Blast+
meme

For all three I am getting a message that looks  like that:

/mnt/galaxy/tmp/job_working_directory/000/2/galaxy_2.sh: blastp: not found
Error invoking command: blastp

Is there a way to fix configuration files for those tools?

Thank you.

Best Regards,
Anatoly


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