Hi Dan, Thanks for the information, I have updated this to my repository manually. Now I can invoke the page but the frames were not loaded correctly.
The log message as follows: /codebase/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/sql/expression.py:1927: SAWarning: The IN-predicate on "request_type.id" was invoked with an empty sequence. This results in a contradiction, which nonetheless can be expensive to evaluate. Consider alternative strategies for improved performance. X.X.X.X - - [09/Aug/2013:15:09:55 -0400] "GET / HTTP/1.1" 200 - "-" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_5) AppleWebKit/536.26.17 (KHTML, like Gecko) Version/6.0.2 Safari/536.26.17" X.X.X.X - - [09/Aug/2013:15:09:56 -0400] "GET /root/tool_menu HTTP/1.1" 404 - "https://galaxy.cbio.mskcc.org/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_5) AppleWebKit/536.26.17 (KHTML, like Gecko) Version/6.0.2 Safari/536.26.17" X.X.X.X - - [09/Aug/2013:15:09:56 -0400] "GET /history HTTP/1.1" 200 - " https://galaxy.cbio.mskcc.org/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_5) AppleWebKit/536.26.17 (KHTML, like Gecko) Version/6.0.2 Safari/536.26.17" X.X.X.X - - [09/Aug/2013:15:09:56 -0400] "GET /history HTTP/1.1" 500 - " https://galaxy.cbio.mskcc.org/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_5) AppleWebKit/536.26.17 (KHTML, like Gecko) Version/6.0.2 Safari/536.26.17" ---------------------------------------- Exception happened during processing of request from ('127.0.0.1', 43370) Traceback (most recent call last): File "/codebase/eggs/Paste-1.7.5.1-py2.6.egg/paste/httpserver.py", line 1068, in process_request_in_thread self.finish_request(request, client_address) File "/usr/lib64/python2.6/SocketServer.py", line 322, in finish_request self.RequestHandlerClass(request, client_address, self) File "/usr/lib64/python2.6/SocketServer.py", line 617, in __init__ self.handle() File "/codebase/eggs/Paste-1.7.5.1-py2.6.egg/paste/httpserver.py", line 442, in handle BaseHTTPRequestHandler.handle(self) File "/usr/lib64/python2.6/BaseHTTPServer.py", line 329, in handle self.handle_one_request() File "/codebase/eggs/Paste-1.7.5.1-py2.6.egg/paste/httpserver.py", line 437, in handle_one_request self.wsgi_execute() File "/codebase/eggs/Paste-1.7.5.1-py2.6.egg/paste/httpserver.py", line 287, in wsgi_execute self.wsgi_start_response) File "/codebase/eggs/Paste-1.7.5.1-py2.6.egg/paste/urlmap.py", line 203, in __call__ return app(environ, start_response) File "/codebase/lib/galaxy/web/framework/middleware/request_id.py", line 12, in __call__ return self.app( environ, start_response ) File "/codebase/lib/galaxy/web/framework/middleware/xforwardedhost.py", line 21, in __call__ return self.app( environ, start_response ) File "/codebase/lib/galaxy/web/framework/middleware/translogger.py", line 68, in __call__ return self.application(environ, replacement_start_response) File "/codebase/lib/galaxy/web/framework/middleware/error.py", line 159, in __call__ exc_info) File "/codebase/lib/galaxy/web/framework/middleware/translogger.py", line 67, in replacement_start_response return start_response( status, headers, exc_info ) File "/codebase/lib/galaxy/web/framework/middleware/error.py", line 149, in __call__ app_iter = self.application(environ, sr_checker) File "/codebase/eggs/Paste-1.7.5.1-py2.6.egg/paste/recursive.py", line 84, in __call__ return self.application(environ, start_response) File "/codebase/eggs/Paste-1.7.5.1-py2.6.egg/paste/httpexceptions.py", line 633, in __call__ return self.application(environ, start_response) File "/codebase/lib/galaxy/web/framework/base.py", line 132, in __call__ return self.handle_request( environ, start_response ) File "/codebase/lib/galaxy/web/framework/base.py", line 199, in handle_request return body( environ, start_response ) File "/codebase/lib/galaxy/web/framework/__init__.py", line 985, in render template.render_context( context ) File "/codebase/eggs/Mako-0.4.1-py2.6.egg/mako/template.py", line 319, in render_context **kwargs) File "/codebase/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py", line 692, in _render_context _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) File "/codebase/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py", line 718, in _exec_template callable_(context, *args, **kwargs) File "/codebase/database/compiled_templates/root/history.mako.py", line 73, in render_body if bool( [ data for data in history.active_datasets if data.state in ['running', 'queued', '', None ] ] ): AttributeError: 'Undefined' object has no attribute 'active_datasets' Do you have any quick way to fix the same? Or update to galaxy-central stable branch? Thank you, Vipin On Fri, Aug 9, 2013 at 2:57 PM, Daniel Blankenberg <d...@bx.psu.edu> wrote: > Hi Vipin, > > This has been fixed in the stable branch of galaxy-central > https://bitbucket.org/galaxy/galaxy-central/commits/cd6fec2f5cba but has > not made it on to galaxy-dist yet. > > > Thanks for using Galaxy, > > Dan > > > > On Aug 9, 2013, at 2:33 PM, Vipin TS wrote: > > Hello dev-team, > > I am experiencing a strange problem with my production instance, after I > carefully merged remote changes from galaxy-dist release to my code > repository. While restarting, It fails to load the the page properly, the > message from log file stating that "serving on 0.0.0.0:8080" > > Here are some message found in the log file: > > X.X.X.X - - [09/Aug/2013:14:30:56 -0400] "GET / HTTP/1.1" 500 - "-" > "Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/534.34 (KHTML, like Gecko) > rekonq Safari/534.34" > Error - <type 'exceptions.ValueError'>: expected only letters, got ' en' > URL: https://galaxy.cbio.mskcc.org/ > File '/codebase/lib/galaxy/web/framework/middleware/error.py', line 149 in > __call__ > app_iter = self.application(environ, sr_checker) > File '/codebase/eggs/Paste-1.7.5.1-py2.6.egg/paste/recursive.py', line 84 > in __call__ > return self.application(environ, start_response) > File '/codebase/eggs/Paste-1.7.5.1-py2.6.egg/paste/httpexceptions.py', > line 633 in __call__ > return self.application(environ, start_response) > File '/codebase/lib/galaxy/web/framework/base.py', line 132 in __call__ > return self.handle_request( environ, start_response ) > File '/codebase/lib/galaxy/web/framework/base.py', line 159 in > handle_request > trans = self.transaction_factory( environ ) > File '/codebase/lib/galaxy/web/framework/__init__.py', line 238 in <lambda> > self.set_transaction_factory( lambda e: self.transaction_chooser( e, > galaxy_app, session_cookie ) ) > File '/codebase/lib/galaxy/web/framework/__init__.py', line 269 in > transaction_chooser > return GalaxyWebTransaction( environ, galaxy_app, self, session_cookie ) > File '/codebase/lib/galaxy/web/framework/__init__.py', line 332 in __init__ > self.setup_i18n() > File '/codebase/lib/galaxy/web/framework/__init__.py', line 370 in > setup_i18n > locales.append( Locale.parse( locale.split( ';' )[0], sep='-' ).language > ) > File '/codebase/eggs/Babel-0.9.4-py2.6.egg/babel/core.py', line 212 in > parse > return cls(*parse_locale(identifier, sep=sep)) > File '/codebase/eggs/Babel-0.9.4-py2.6.egg/babel/core.py', line 763 in > parse_locale > raise ValueError('expected only letters, got %r' % lang) > ValueError: expected only letters, got ' en' > > > CGI Variables > ------------- > CONTENT_LENGTH: '0' > HTTP_ACCEPT: > 'text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8' > HTTP_ACCEPT_CHARSET: 'utf-8,*;q=0.5' > HTTP_ACCEPT_ENCODING: 'gzip, deflate, x-gzip, x-deflate' > HTTP_ACCEPT_LANGUAGE: 'en-US, en-US; q=0.8, en; q=0.6' > HTTP_CACHE_CONTROL: 'max-age=0' > HTTP_CONNECTION: 'Keep-Alive' > HTTP_HOST: 'galaxy.cbio.mskcc.org' > HTTP_USER_AGENT: 'Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/534.34 > (KHTML, like Gecko) rekonq Safari/534.34' > HTTP_X_FORWARDED_FOR: '172.21.50.129' > HTTP_X_FORWARDED_HOST: 'galaxy.cbio.mskcc.org' > HTTP_X_FORWARDED_SERVER: 'galaxy.cbio.mskcc.org' > HTTP_X_URL_SCHEME: 'https' > ORGINAL_HTTP_HOST: 'localhost:8081' > ORGINAL_REMOTE_ADDR: '127.0.0.1' > PATH_INFO: '/' > REMOTE_ADDR: '172.21.50.129' > REQUEST_METHOD: 'GET' > SERVER_NAME: '0.0.0.0' > SERVER_PORT: '8081' > SERVER_PROTOCOL: 'HTTP/1.1' > > > WSGI Variables > -------------- > application: <paste.recursive.RecursiveMiddleware object at 0x7f78910> > is_api_request: False > original_wsgi.url_scheme: 'http' > paste.expected_exceptions: [<class 'paste.httpexceptions.HTTPException'>] > paste.httpexceptions: <paste.httpexceptions.HTTPExceptionHandler object > at 0x7f78210> > paste.httpserver.thread_pool: <paste.httpserver.ThreadPool object at > 0x8066d90> > paste.recursive.forward: <paste.recursive.Forwarder from /> > paste.recursive.include: <paste.recursive.Includer from /> > paste.recursive.include_app_iter: <paste.recursive.IncluderAppIter from > /> > paste.recursive.script_name: '' > paste.throw_errors: True > request_id: 'd4f643a8012111e3819090b11c087d99' > wsgi process: 'Multithreaded' > ------------------------------------------------------------ > > Any idea what is going wrong here? Please let me know if you need more get > more details. > > Many thanks, > --/Vipin > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > > >
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
