Hi Bjoern & Greg,

The Biopython package looks OK on the test tool shed,
http://testtoolshed.g2.bx.psu.edu/view/biopython/package_biopython_1_61

This includes the lines:

    <package name="numpy" version="1.7.1">
        <repository changeset_revision="ad6ebe2c75ef"
name="package_numpy_1_7" owner="bgruening"
prior_installation_required="True"
toolshed="http://testtoolshed.g2.bx.psu.edu"; />
    </package>
    <package name="matplotlib" version="1.2.1">
        <repository changeset_revision="c888aa8ed318"
name="package_matplotlib_1_2" owner="bgruening"
prior_installation_required="True"
toolshed="http://testtoolshed.g2.bx.psu.edu"; />
    </package>

Note that we plan to update those dependencies to point
at the IUC account, not Bjoern's personal account.

However, on the main Tool Shed something is broken with the
dependencies lacking relevant revisions:
http://toolshed.g2.bx.psu.edu/view/biopython/package_biopython_1_61

    <package name="numpy" version="1.7.1">
        <repository name="package_numpy_1_7" owner="bgruening"
prior_installation_required="True"
toolshed="http://toolshed.g2.bx.psu.edu"; />
    </package>
    <package name="matplotlib" version="1.2.1">
        <repository name="package_matplotlib_1_2" owner="bgruening"
prior_installation_required="True"
toolshed="http://toolshed.g2.bx.psu.edu"; />
    </package>

My guess is the revisions failed because there is no such
repository on the main Tool Shed (they do exist under the
new IUC user through, while on the Test Tool Shed they
exist under both usernames for now).

Bjoern, do you remember if this was a manual upload to
the Main Tool Shed, or done via the migration script?

Greg, if this was uploaded manually, the reference to
non-existent repositories should have shown up as an
error. If this was migrated, was there no error message?

Bjoern, are you happy to update both the test & main
repositories to point at the IUC packages now? Or
should I do that myself?

Thanks,

Peter
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