On Mon, Aug 12, 2013 at 12:51 PM, Bjoern Gruening
<bjoern.gruen...@gmail.com> wrote:
> Hi Peter,
>
>> On Wed, Apr 24, 2013 at 5:05 PM, Iry Witham <iry.wit...@jax.org> wrote:
>> > Hi Team,
>> >
>> > I am trying to get GATK tools added to my cloud instance and keep getting
>> > the following error: [Errno 2] No such file or directory:
>> > '/mnt/galaxyData/tmp/tmpszWRLP/GenomeAnalysisTKLite-2.3-9-gdcdccbb/GenomeAnalysisTK.jar'.
>> > Then when I try to install it again I get the following: All selected tool
>> > dependencies are already installed.  I also get the following error:
>> > Initializing repository installation failed.
>> >
>> > Thanks,
>> >
>> > Iry
>>
>> Did you solve this Iry?
>>
>> I'm seeing the same "Initializing repository installation failed" error
>> intermediately myself, for instance with package_freetype_2_4
>> just now - I'm unclear if this was a false alarm or not. I am currently
>> deinstalling/reinstalling things.
>
> do you see it in the web interface? It's a false positive warning. It
> never did any harm for me. I think I have filled it as trello issue
> once, beside many other small usability bugs, but as usual I could not
> find the card.

Yes, it pops up in the middle of the web interface - I wasn't
sure if it was a real failure or not, so you may be right about
it being a false positive.

Thanks.

Peter
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